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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198275 (32 seq.)
>W1710893072
LNEJ01000063
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
9864
9788
-
Arg
TCT
[ENA]
¡û
>W1710893917
LNFF01000025
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
88218
88294
+
Arg
TCT
[ENA]
¡û
>WENV180043146
LQAH01004202
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1733
1809
+
Arg
TCT
[ENA]
¢þ
>WENV180295860
OBIZ01390965
[OBIZ] soil metagenome; soil
106
182
+
Arg
TCT
[ENA]
¢þ
>WENV180297081
OBJA01009524
[OBJA] soil metagenome; sediment, water from around vicinity
2693
2617
-
Arg
TCT
[ENA]
¢þ
>WENV180320574
OBKQ01000087
[OBKQ] soil metagenome; Clay
2108
2184
+
Arg
TCT
[ENA]
¢þ
>WENV180342144
OBLJ01000001
[OBLJ] soil metagenome; Clay
15786
15710
-
Arg
TCT
[ENA]
¢þ
>WENV180345450
OBLN01000163
[OBLN] sediment metagenome; sediment
16442
16518
+
Arg
TCT
[ENA]
¢þ
>WENV181171520
OEIV010255489
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
361
437
+
Arg
TCT
[ENA]
¢þ
>WENV181292649
OFHF01003445
[OFHF] soil metagenome; Clay
2039
2115
+
Arg
TCT
[ENA]
¢þ
>WENV181293062
OFHG01000001
[OFHG] soil metagenome; Clay
206952
207028
+
Arg
TCT
[ENA]
¢þ
>WENV181294519
OFHH01006252
[OFHH] soil metagenome; Clay
982
906
-
Arg
TCT
[ENA]
¢þ
>WENV181296800
OFHK01000335
[OFHK] soil metagenome; Clay
8424
8348
-
Arg
TCT
[ENA]
¢þ
>WENV181297591
OFHK01078536
[OFHK] soil metagenome; Clay
569
645
+
Arg
TCT
[ENA]
¢þ
>WENV183622485
OOFV01062823
[OOFV] marine metagenome; seawater
473
549
+
Arg
TCT
[ENA]
¢þ
>WENV170478541
CEVK01062508
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
453
377
-
Arg
TCT
[ENA]
¢þ
>WENV170647416
JQIA01025656
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2629
2705
+
Arg
TCT
[ENA]
¢þ
>WENV170655280
JTFN01017000
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
511
435
-
Arg
TCT
[ENA]
¢þ
>WENV170712431
LNFM01013283
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9879
9803
-
Arg
TCT
[ENA]
¢þ
>WENV170781334
MAAB01032308
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
43936
44012
+
Arg
TCT
[ENA]
¢þ
>WENV170782678
MAAC01011136
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
21032
20956
-
Arg
TCT
[ENA]
¢þ
>WENV170783074
MAAC01013512
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
236
160
-
Arg
TCT
[ENA]
¢þ
>WENV170783599
MAAC01018086
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7344
7268
-
Arg
TCT
[ENA]
¢þ
>WENV170963498
MRWG01000237
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
28157
28081
-
Arg
TCT
[ENA]
¢þ
>CL171000010
AP014633
Gammaproteobacteria
Thioploca ingrica [AP014633]
2364985
2364657
-
Arg
TCT
[Ensembl]
¡û
>C191004439
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
1720593
1720517
-
Arg
TCT
-
¡û
>W09134585
ACUL01000236
Gammaproteobacteria
Legionella drancourtii LLAP12 [ACUL]
3815
3891
+
Arg
TCT
[ENA]
¡û
>C121011878
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
831001
830925
-
Arg
TCT
[Ensembl]
¡û
>C161050920
CP013099
Gammaproteobacteria
Candidatus Tenderia electrophaga [CP013099]
2286306
2286230
-
Arg
TCT
-
¡û
>C161093382
CP016027
Gammaproteobacteria
Halothiobacillus sp. LS2 [CP016027]
84250
84326
+
Arg
TCT
[Ensembl]
¡û
>W1610753338
LNEJ01000063
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0074134 [LNEJ]
9864
9788
-
Arg
TCT
[ENA]
¡û
>W1610754183
LNFF01000025
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
88218
88294
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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