This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19843 (25 seq.)
>C171083833
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2213017
2212927
-
Ser
CGA
-
¡û
>C171094245
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2115021
2114931
-
Ser
CGA
-
¡û
>WENV180743185
ODHH01135614
[ODHH] human metagenome; G_DNA_Stool
77
167
+
Ser
CGA
[ENA]
¡û
>WENV181149580
OEHT01122516
[OEHT] human metagenome; G_DNA_Stool
169
259
+
Ser
CGA
[ENA]
¡û
>WENV181402386
OFTY01001012
[OFTY] sludge metagenome; sludge
489
579
+
Ser
CGA
[ENA]
¡û
>WENV181883032
OGXI01001326
[OGXI] human gut metagenome; faeces
13214
13124
-
Ser
CGA
[ENA]
¡û
>WENV181973007
OHAA01007245
[OHAA] human gut metagenome; faeces
1939
1849
-
Ser
CGA
[ENA]
¡û
>WENV182009828
OHBJ01055648
[OHBJ] human gut metagenome; faeces
199
109
-
Ser
CGA
[ENA]
¡û
>WENV183131519
OLOA01057217
[OLOA] human gut metagenome; faeces
43
133
+
Ser
CGA
[ENA]
¡û
>WENV183331127
OLWB01056025
[OLWB] human gut metagenome; faeces
706
796
+
Ser
CGA
[ENA]
¡û
>WENV183575651
OOCI01004667
[OOCI] human gut metagenome; human gut
313
223
-
Ser
CGA
[ENA]
¡û
>WENV183655444
OQWD01020252
[OQWD] human gut metagenome; human gut
106
16
-
Ser
CGA
[ENA]
¡û
>WENV170067108
CDZO01000898
[CDZO] gut metagenome; human stools
374
464
+
Ser
CGA
[ENA]
¡û
>WENV170068467
CDZP01007495
[CDZP] gut metagenome; human stools
844
754
-
Ser
CGA
[ENA]
¡û
>WENV170069967
CDZQ01008458
[CDZQ] gut metagenome; human stools
8733
8823
+
Ser
CGA
[ENA]
¡û
>W09119232
ACDQ01000002
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
156492
156582
+
Ser
CGA
[ENA]
¡û
>W2010264337
CABKOJ020000009
Betaproteobacteria
Oxalobacter formigenes [CABKOJ]
247963
248053
+
Ser
CGA
[ENA]
¡û
>W2011453449
RKQL01000001
Betaproteobacteria
Tibeticola sediminis DSM 101684 [RKQL]
704199
704109
-
Ser
CGA
[ENA]
¡û
>C201107528
CP042242
Betaproteobacteria
Oxalobacter formigenes SSYG-15 [CP042242]
546466
546556
+
Ser
CGA
-
¡û
>C211120592
CP059256
Betaproteobacteria
Burkholderiaceae bacterium [CP059256]
514204
514114
-
Ser
CGA
-
¡û
>C231399318
CP098243
Betaproteobacteria
Oxalobacter formigenes HOxHM18 [CP098243]
1962122
1962032
-
Ser
CGA
-
¡û
>C231399333
CP098244
Betaproteobacteria
Oxalobacter formigenes OxWR1 [CP098244]
164170
164260
+
Ser
CGA
-
¡û
>C231399403
CP098245
Betaproteobacteria
Oxalobacter formigenes HOxSLD-1 [CP098245]
2386378
2386288
-
Ser
CGA
-
¡û
>C231399452
CP098246
Betaproteobacteria
Oxalobacter formigenes HOxSLD-2 [CP098246]
2205207
2205117
-
Ser
CGA
-
¡û
>C231399560
CP098248
Betaproteobacteria
Oxalobacter sp. JAC-2022 HOxNP-1 [CP098248]
1785909
1785819
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK