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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198768 (57 seq.)
>W1711642926
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
863925
863849
-
Met
CAT
[ENA]
¡û
>W1711643137
MPZX01000001
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
1060700
1060776
+
Met
CAT
[ENA]
¡û
>W1711947280
NBNZ01000001
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
436394
436318
-
Met
CAT
[ENA]
¡û
>W1711947346
NBOA01000005
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
388583
388507
-
Met
CAT
[ENA]
¡û
>W131180850
ARNL01000042
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
49402
49478
+
Met
CAT
[ENA]
¡û
>w023642
AAYA01000010
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
72509
72587
+
Met
CAT
[ENA]
¡û
>w012755
AAMS01000009
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
1409
1336
-
Met
CAT
[ENA]
¡û
>C171032461
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
87693
87617
-
Met
CAT
-
¡û
>C171118966
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
1338936
1338860
-
Met
CAT
-
¡û
>W141020462
AJKJ01000028
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
482
406
-
Met
CAT
[ENA]
¡û
>WENV180395660
OBPT01067709
[OBPT] marine metagenome; ENVO:00002010 seawater
260
337
+
Ile2
CAT
[ENA]
¡û
>WENV180590903
OCOU01032256
[OCOU] marine metagenome; Water
455
379
-
Ile2
CAT
[ENA]
¡û
>W141082576
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
242570
242646
+
Met
CAT
[ENA]
¡û
>W141142912
AWRV01000362
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
9266
9342
+
Met
CAT
[ENA]
¡û
>WENV170602674
FUWD010252370
[FUWD] metagenome; unknown
365
289
-
Met
CAT
[ENA]
¡û
>WENV170705246
LLEQ01001231
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2514
2590
+
Met
CAT
[ENA]
¡û
>PL191001395
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
806003
806079
+
Met
CAT
[ENA]
¡û
>C181068122
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
3424921
3424845
-
Met
CAT
-
¡û
>W141531706
JHEH01000005
Alphaproteobacteria
Thioclava dalianensis [JHEH]
162672
162748
+
Met
CAT
[ENA]
¡û
>C191159602
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
864672
864596
-
Met
CAT
-
¡û
>W1910548453
FZON01000021
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
63271
63347
+
Met
CAT
[ENA]
¡û
>W1911283629
NTJD01000003
Alphaproteobacteria
Thioclava arenosa CAU 1312 [NTJD]
241922
241846
-
Met
CAT
[ENA]
¡û
>W1911813214
QZEV01000103
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
2908
2984
+
Met
CAT
[ENA]
¡û
>W1810684492
QKYL01000125
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
25853
25929
+
Met
CAT
[ENA]
¡û
>W1810694759
QLMG01000057
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
519
443
-
Met
CAT
[ENA]
¡û
>W2010430214
FZON01000021
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
63271
63347
+
Ile2
CAT
[ENA]
¡û
>W2010469694
JAAGOU010000006
Alphaproteobacteria
Yangia sp. PrR002 [JAAGOU]
185716
185792
+
Ile2
CAT
[ENA]
¡û
>W2010469777
JAAGOV010000054
Alphaproteobacteria
Yangia sp. PrR003 [JAAGOV]
113405
113481
+
Ile2
CAT
[ENA]
¡û
>W2011185617
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1304939
1305015
+
Ile2
CAT
[ENA]
¡û
>W2011347484
QZEV01000103
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
2908
2984
+
Ile2
CAT
[ENA]
¡û
>W2011479315
RQRT01000003
Alphaproteobacteria
Paracoccus sp. I-41R45 [RQRT]
74063
73987
-
Ile2
CAT
[ENA]
¡û
>W2011679988
SRPG01000034
Alphaproteobacteria
Paracoccus sp. 3058 [SRPG]
13593
13517
-
Ile2
CAT
[ENA]
¡û
>W2011698062
SUNI01000007
Alphaproteobacteria
Paracoccus gahaiensis KCTC 42687 [SUNI]
44233
44309
+
Ile2
CAT
[ENA]
¡û
>W2011978595
VCQM01000031
Alphaproteobacteria
Thioclava sp. BHET1 [VCQM]
2561
2485
-
Ile2
CAT
[ENA]
¡û
>W2011980934
VDDD01000030
Alphaproteobacteria
Paracoccus marcusii CGMCC 1.8602 [VDDD]
11825
11901
+
Ile2
CAT
[ENA]
¡û
>SRA1051814
SRR035098.81212
454 Sequencing (SRP001819)
10
86
+
Met
CAT
[SRA]
>SRA1051891
SRR035098.94958
454 Sequencing (SRP001819)
106
182
+
Met
CAT
[SRA]
>SRA1053470
SRR035098.412978
454 Sequencing (SRP001819)
65
141
+
Met
CAT
[SRA]
>W2110315434
JADFFK010000010
Alphaproteobacteria
Salipiger mangrovisoli 6D45A [JADFFK]
120434
120510
+
Ile2
CAT
[ENA]
¡û
>W2110423482
JAEKJU010000013
Alphaproteobacteria
Salipiger thiooxidans SY-1-11 [JAEKJU]
126821
126897
+
Ile2
CAT
[ENA]
¡û
>W2110423509
JAEKJV010000002
Alphaproteobacteria
Salipiger bermudensis SY-1-12 [JAEKJV]
424402
424478
+
Ile2
CAT
[ENA]
¡û
>W2110650632
JAHUZG010000001
Alphaproteobacteria
Mameliella sp. DP3N28-2 [JAHUZG]
818709
818785
+
Ile2
CAT
[ENA]
¡û
>W2110654712
JAHVJY010000003
Alphaproteobacteria
Mameliella alba DP3N21-4 [JAHVJY]
493664
493588
-
Ile2
CAT
[ENA]
¡û
>C211069267
CP047166
Alphaproteobacteria
Rhodobacteraceae bacterium C31 [CP047166]
1921152
1921076
-
Ile2
CAT
-
¡û
>W2110700710
JAIUZF010000011
Alphaproteobacteria
Salipiger thiooxidans DP5Y115-2 [JAIUZF]
66704
66628
-
Ile2
CAT
[ENA]
¡û
>C211216916
CP065892
Alphaproteobacteria
Paracoccus marcusii CP157 [CP065892]
1240682
1240606
-
Ile2
CAT
-
¡û
>C231112709
CP067169
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [CP067169]
2130659
2130583
-
Ile2
CAT
-
¡û
>W2110778469
VUOJ01000002
Alphaproteobacteria
Paracoccus sp. NBH48 [VUOJ]
297559
297635
+
Ile2
CAT
[ENA]
¡û
>W2130041399
JAIUZU010000008
Alphaproteobacteria
Salipiger pacificus AmN21-11 [JAIUZU]
242899
242823
-
Ile2
CAT
[ENA]
¡û
>W1511698388
LGHS01000073
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
36115
36191
+
Met
CAT
[ENA]
¡û
>W1511698454
LGHU01000070
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
15942
16018
+
Met
CAT
[ENA]
¡û
>W1710508086
FMVT01000004
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
141253
141329
+
Met
CAT
[ENA]
¡û
>W1710514279
FNAV01000010
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
126803
126879
+
Met
CAT
[ENA]
¡û
>W1710516223
FNCL01000002
Alphaproteobacteria
Alloyangia pacifica [FNCL]
366262
366338
+
Met
CAT
[ENA]
¡û
>W1710543092
FNZQ01000004
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
177799
177875
+
Met
CAT
[ENA]
¡û
>W1710546965
FOCO01000020
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
18514
18590
+
Met
CAT
[ENA]
¡û
>W1710570318
FOVB01000002
Alphaproteobacteria
Thioclava dalianensis [FOVB]
214354
214278
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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