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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19883 (91 seq.)
>WENV180006078
FLRX01134171
[FLRX] metagenome; saliva
89
1
-
Ser
GGA
[ENA]
¡û
>WENV180010939
FLSI01028301
[FLSI] metagenome; saliva
294
206
-
Ser
GGA
[ENA]
¡û
>WENV180012235
FLSK01286439
[FLSK] metagenome; saliva
89
1
-
Ser
GGA
[ENA]
¡û
>WENV180719412
ODGJ01001460
[ODGJ] human metagenome; G_DNA_Tongue dorsum
1917
1829
-
Ser
GGA
[ENA]
¡û
>WENV180726833
ODGU01000681
[ODGU] human metagenome; G_DNA_Supragingival plaque
1459
1371
-
Ser
GGA
[ENA]
¡û
>WENV180727086
ODGU01002015
[ODGU] human metagenome; G_DNA_Supragingival plaque
12312
12400
+
Ser
GGA
[ENA]
¡û
>WENV180727685
ODGU01009578
[ODGU] human metagenome; G_DNA_Supragingival plaque
1242
1154
-
Ser
GGA
[ENA]
¡û
>WENV180732569
ODGY01001505
[ODGY] human metagenome; G_DNA_Supragingival plaque
1801
1889
+
Ser
GGA
[ENA]
¡û
>WENV180733700
ODGZ01000542
[ODGZ] human metagenome; G_DNA_Supragingival plaque
24309
24397
+
Ser
GGA
[ENA]
¡û
>WENV180738671
ODHD01000250
[ODHD] human metagenome; G_DNA_Supragingival plaque
45361
45449
+
Ser
GGA
[ENA]
¡û
>WENV180750197
ODHS01000721
[ODHS] human metagenome; G_DNA_Supragingival plaque
8996
8908
-
Ser
GGA
[ENA]
¡û
>WENV180759733
ODHY01117955
[ODHY] human metagenome; G_DNA_Buccal mucosa
142
54
-
Ser
GGA
[ENA]
¡û
>WENV180768353
ODIG01005540
[ODIG] human metagenome; G_DNA_Tongue dorsum
4895
4807
-
Ser
GGA
[ENA]
¡û
>WENV180776755
ODIK01122976
[ODIK] human metagenome; G_DNA_Tongue dorsum
65
153
+
Ser
GGA
[ENA]
¡û
>WENV180778045
ODIM01000381
[ODIM] human metagenome; G_DNA_Supragingival plaque
4318
4406
+
Ser
GGA
[ENA]
¡û
>WENV180779028
ODIN01000191
[ODIN] human metagenome; G_DNA_Throat
23905
23993
+
Ser
GGA
[ENA]
¡û
>WENV180787455
ODIS01006436
[ODIS] human metagenome; G_DNA_Supragingival plaque
555
467
-
Ser
GGA
[ENA]
¡û
>WENV180795527
ODJB01000023
[ODJB] human metagenome; G_DNA_Supragingival plaque
56441
56529
+
Ser
GGA
[ENA]
¡û
>WENV180800897
ODJD01002622
[ODJD] human metagenome; G_DNA_Supragingival plaque
4384
4472
+
Ser
GGA
[ENA]
¡û
>WENV180804313
ODJG01001623
[ODJG] human metagenome; G_DNA_Supragingival plaque
7438
7350
-
Ser
GGA
[ENA]
¡û
>WENV180808894
ODJK01001704
[ODJK] human metagenome; G_DNA_Subgingival plaque
5144
5056
-
Ser
GGA
[ENA]
¡û
>WENV180813225
ODJO01000172
[ODJO] human metagenome; G_DNA_Supragingival plaque
9501
9413
-
Ser
GGA
[ENA]
¡û
>WENV180816831
ODJP01069473
[ODJP] human metagenome; G_DNA_Tongue dorsum
128
40
-
Ser
GGA
[ENA]
¡û
>WENV180824301
ODJX01002762
[ODJX] human metagenome; G_DNA_Supragingival plaque
3107
3195
+
Ser
GGA
[ENA]
¡û
>WENV180831609
ODKC01000009
[ODKC] human metagenome; G_DNA_Supragingival plaque
95531
95443
-
Ser
GGA
[ENA]
¡û
>WENV180834929
ODKE01000181
[ODKE] human metagenome; G_DNA_Supragingival plaque
26577
26665
+
Ser
GGA
[ENA]
¡û
>WENV180843154
ODKN01000722
[ODKN] human metagenome; G_DNA_Supragingival plaque
1237
1149
-
Ser
GGA
[ENA]
¡û
>WENV180846090
ODKT01004944
[ODKT] human metagenome; G_DNA_Supragingival plaque
5633
5721
+
Ser
GGA
[ENA]
¡û
>WENV180852410
ODKW01000879
[ODKW] human metagenome; G_DNA_Tongue dorsum
157
69
-
Ser
GGA
[ENA]
¡û
>WENV180859930
ODLD01008405
[ODLD] human metagenome; G_DNA_Supragingival plaque
94
6
-
Ser
GGA
[ENA]
¡û
>WENV180888038
ODMN01000020
[ODMN] human metagenome; G_DNA_Supragingival plaque
72430
72518
+
Ser
GGA
[ENA]
¡û
>WENV180888338
ODMN01000504
[ODMN] human metagenome; G_DNA_Supragingival plaque
15340
15428
+
Ser
GGA
[ENA]
¡û
>WENV180921727
ODTJ01000306
[ODTJ] human metagenome; G_DNA_Supragingival plaque
42878
42966
+
Ser
GGA
[ENA]
¡û
>WENV180924398
ODTK01004368
[ODTK] human metagenome; G_DNA_Supragingival plaque
2761
2673
-
Ser
GGA
[ENA]
¡û
>WENV180927882
ODTM01006112
[ODTM] human metagenome; G_DNA_Supragingival plaque
888
800
-
Ser
GGA
[ENA]
¡û
>WENV180931034
ODTP01001138
[ODTP] human metagenome; G_DNA_Tongue dorsum
7677
7589
-
Ser
GGA
[ENA]
¡û
>WENV180938494
ODTX01002415
[ODTX] human metagenome; G_DNA_Supragingival plaque
569
481
-
Ser
GGA
[ENA]
¡û
>WENV180944378
ODUC01015531
[ODUC] human metagenome; G_DNA_Supragingival plaque
2312
2400
+
Ser
GGA
[ENA]
¡û
>WENV180944588
ODUC01024017
[ODUC] human metagenome; G_DNA_Supragingival plaque
1975
2063
+
Ser
GGA
[ENA]
¡û
>WENV180947808
ODUG01000047
[ODUG] human metagenome; G_DNA_Tongue dorsum
75725
75637
-
Ser
GGA
[ENA]
¡û
>WENV180950591
ODUH01000239
[ODUH] human metagenome; G_DNA_Subgingival plaque
6222
6134
-
Ser
GGA
[ENA]
¡û
>WENV180964953
ODUO01060101
[ODUO] human metagenome; G_DNA_Supragingival plaque
194
282
+
Ser
GGA
[ENA]
¡û
>WENV180980736
ODVE01001538
[ODVE] human metagenome; G_DNA_Supragingival plaque
3098
3186
+
Ser
GGA
[ENA]
¡û
>WENV180983083
ODVF01003319
[ODVF] human metagenome; G_DNA_Supragingival plaque
3039
3127
+
Ser
GGA
[ENA]
¡û
>WENV180990676
ODVN01003269
[ODVN] human metagenome; G_DNA_Tongue dorsum
5547
5459
-
Ser
GGA
[ENA]
¡û
>WENV180998265
ODVT01000122
[ODVT] human metagenome; G_DNA_Buccal mucosa
7736
7648
-
Ser
GGA
[ENA]
¡û
>WENV181002127
ODVX01000038
[ODVX] human metagenome; G_DNA_Supragingival plaque
64303
64215
-
Ser
GGA
[ENA]
¡û
>WENV181007463
ODWE01000111
[ODWE] human metagenome; G_DNA_Supragingival plaque
57014
57102
+
Ser
GGA
[ENA]
¡û
>WENV181008472
ODWE01006051
[ODWE] human metagenome; G_DNA_Supragingival plaque
1242
1154
-
Ser
GGA
[ENA]
¡û
>WENV181019976
ODWU01030397
[ODWU] human metagenome; G_DNA_Supragingival plaque
520
608
+
Ser
GGA
[ENA]
¡û
>WENV181042595
ODXU01001259
[ODXU] human metagenome; G_DNA_Buccal mucosa
4077
3989
-
Ser
GGA
[ENA]
¡û
>WENV181043466
ODXV01000033
[ODXV] human metagenome; G_DNA_Tongue dorsum
51278
51366
+
Ser
GGA
[ENA]
¡û
>WENV181049583
ODYD01000763
[ODYD] human metagenome; G_DNA_Supragingival plaque
3144
3056
-
Ser
GGA
[ENA]
¡û
>WENV181049657
ODYD01001152
[ODYD] human metagenome; G_DNA_Supragingival plaque
10792
10880
+
Ser
GGA
[ENA]
¡û
>WENV181059250
ODYM01000186
[ODYM] human metagenome; G_DNA_Tongue dorsum
16098
16186
+
Ser
GGA
[ENA]
¡û
>WENV181064261
ODYP01016304
[ODYP] human metagenome; G_DNA_Supragingival plaque
606
518
-
Ser
GGA
[ENA]
¡û
>WENV181066879
ODZI01002928
[ODZI] human metagenome; G_DNA_Supragingival plaque
3627
3539
-
Ser
GGA
[ENA]
¡û
>WENV181069876
OEAE01000023
[OEAE] human metagenome; G_DNA_Supragingival plaque
93846
93758
-
Ser
GGA
[ENA]
¡û
>WENV181076443
OEAP01005473
[OEAP] human metagenome; G_DNA_Supragingival plaque
3863
3951
+
Ser
GGA
[ENA]
¡û
>WENV181079373
OEAS01005492
[OEAS] human metagenome; G_DNA_Supragingival plaque
3143
3055
-
Ser
GGA
[ENA]
¡û
>WENV181082860
OEAV01000926
[OEAV] human metagenome; G_DNA_Supragingival plaque
9969
9881
-
Ser
GGA
[ENA]
¡û
>WENV181085320
OEAX01005507
[OEAX] human metagenome; G_DNA_Tongue dorsum
1136
1048
-
Ser
GGA
[ENA]
¡û
>WENV181087135
OEAY01013293
[OEAY] human metagenome; G_DNA_Tongue dorsum
993
905
-
Ser
GGA
[ENA]
¡û
>WENV181091554
OEBC01047723
[OEBC] human metagenome; G_DNA_Supragingival plaque
312
224
-
Ser
GGA
[ENA]
¡û
>WENV181097677
OECA01020171
[OECA] human metagenome; G_DNA_Tongue dorsum
860
772
-
Ser
GGA
[ENA]
¡û
>WENV181104092
OECV01055934
[OECV] human metagenome; G_DNA_Throat
153
65
-
Ser
GGA
[ENA]
¡û
>WENV181106792
OEEI01000201
[OEEI] human metagenome; G_DNA_Supragingival plaque
26234
26322
+
Ser
GGA
[ENA]
¡û
>WENV181115485
OEEO01101510
[OEEO] human metagenome; G_DNA_Supragingival plaque
144
232
+
Ser
GGA
[ENA]
¡û
>WENV181120212
OEFJ01010742
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
535
623
+
Ser
GGA
[ENA]
¡û
>WENV181121336
OEFL01002435
[OEFL] human metagenome; G_DNA_Supragingival plaque
4278
4366
+
Ser
GGA
[ENA]
¡û
>WENV181123874
OEFQ01001792
[OEFQ] human metagenome; G_DNA_Supragingival plaque
3236
3148
-
Ser
GGA
[ENA]
¡û
>WENV181136162
OEGI01001145
[OEGI] human metagenome; G_DNA_Supragingival plaque
6769
6857
+
Ser
GGA
[ENA]
¡û
>WENV181137324
OEGJ01001916
[OEGJ] human metagenome; G_DNA_Supragingival plaque
888
800
-
Ser
GGA
[ENA]
¡û
>WENV181140736
OEGT01000096
[OEGT] human metagenome; G_DNA_Throat
6834
6746
-
Ser
GGA
[ENA]
¡û
>WENV181144105
OEHM01091452
[OEHM] human metagenome; G_DNA_Supragingival plaque
66
154
+
Ser
GGA
[ENA]
¡û
>WENV181146132
OEHQ01001187
[OEHQ] human metagenome; G_DNA_Supragingival plaque
601
513
-
Ser
GGA
[ENA]
¡û
>WENV181152200
OEIA01000357
[OEIA] human metagenome; G_DNA_Supragingival plaque
24594
24682
+
Ser
GGA
[ENA]
¡û
>WENV181155942
OEIE01000918
[OEIE] human metagenome; G_DNA_Supragingival plaque
6857
6769
-
Ser
GGA
[ENA]
¡û
>WENV181179548
OEJT01007453
[OEJT] human metagenome; G_DNA_Supragingival plaque
2009
1921
-
Ser
GGA
[ENA]
¡û
>WENV181180951
OEJU01002366
[OEJU] human metagenome; G_DNA_Supragingival plaque
3079
3167
+
Ser
GGA
[ENA]
¡û
>WENV181181897
OEJV01000583
[OEJV] human metagenome; G_DNA_Supragingival plaque
3246
3158
-
Ser
GGA
[ENA]
¡û
>W141242777
CAIT01000006
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
1294562
1294652
+
Ser
GGA
[ENA]
¡û
>WENV182640029
OJLB01000072
[OJLB] metagenome; surface
49240
49328
+
Ser
GGA
[ENA]
¡û
>C181063773
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
683662
683574
-
Ser
GGA
-
¡û
>C181147984
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
160969
161057
+
Ser
GGA
-
¡û
>C181224953
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
2405720
2405808
+
Ser
GGA
-
¡û
>W1810503582
QBKG01000001
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
508944
509032
+
Ser
GGA
[ENA]
¡û
>C241107674
CP046316
Bacteroidota
Capnocytophaga sp. FDAARGOS_737 [CP046316]
1983315
1983227
-
Ser
GGA
-
¡û
>W11163153
AFHP01000011
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
122349
122261
-
Ser
GGA
[ENA]
¡û
>C161068897
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
2147101
2147013
-
Ser
GGA
[Ensembl]
¡û
>W1710571423
FOVX01000003
Bacteroidota
Capnocytophaga haemolytica [FOVX]
143995
144083
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK