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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199776 (128 seq.)
>W1710858034
LMAR01000051
Alphaproteobacteria
Bosea thiooxidans [LMAR]
16907
16831
-
Pro
CGG
[ENA]
¡û
>W1710864239
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2837818
2837742
-
Pro
CGG
[ENA]
¡û
>W1710893359
LNER01000241
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2647
2723
+
Pro
CGG
[ENA]
¡û
>W1711009530
LQQT01000017
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
31589
31513
-
Pro
CGG
[ENA]
¡û
>W1711073137
LSIG01000150
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
14402
14326
-
Pro
CGG
[ENA]
¡û
>W1711073823
LSIY01000231
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
9285
9361
+
Pro
CGG
[ENA]
¡û
>W1711074353
LSJL01000113
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
62366
62290
-
Pro
CGG
[ENA]
¡û
>W1711074605
LSJR01000269
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
121
197
+
Pro
CGG
[ENA]
¡û
>W1711074780
LSJV01000176
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
74432
74508
+
Pro
CGG
[ENA]
¡û
>W1711075578
LSKN01000235
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
74623
74699
+
Pro
CGG
[ENA]
¡û
>W1711257116
LYTJ01000023
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
258242
258318
+
Pro
CGG
[ENA]
¡û
>W1711286666
LZTH01000012
Alphaproteobacteria
Mesorhizobium loti [LZTH]
673661
673585
-
Pro
CGG
[ENA]
¡û
>W1711286723
LZTI01000012
Alphaproteobacteria
Mesorhizobium loti [LZTI]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1711286778
LZTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1711286878
LZTL01000023
Alphaproteobacteria
Mesorhizobium loti [LZTL]
180749
180825
+
Pro
CGG
[ENA]
¡û
>W1711353193
MDDT01000057
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
368758
368682
-
Pro
CGG
[ENA]
¡û
>W1711353232
MDDU01000035
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
14982
15058
+
Pro
CGG
[ENA]
¡û
>W1711384681
MEDI01000056
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
763
839
+
Pro
CGG
[ENA]
¡û
>W1711386086
MEEW01000156
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
6429
6505
+
Pro
CGG
[ENA]
¡û
>W1711505380
MKVL01000025
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
644632
644556
-
Pro
CGG
[ENA]
¡û
>W131182184
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
565241
565165
-
Pro
CGG
[ENA]
¡û
>C171057732
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
1575176
1575252
+
Pro
CGG
-
¡û
>C171072662
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1356644
1356720
+
Pro
CGG
-
¡û
>WENV011790
AACY020321134
Marine microbial communities from Global Ocean Sampling (GOS)
847
769
-
Pro
CGG
[ENA]
>WENV180020587
FTCZ01006684
[FTCZ] metagenome; soil
1403
1327
-
Pro
CGG
[ENA]
¢þ
>WENV180032778
FTKD01000800
[FTKD] metagenome; soil
1219
1295
+
Pro
CGG
[ENA]
¢þ
>WENV180099508
NMRC01010263
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
717
793
+
Pro
CGG
[ENA]
¢þ
>WENV180256003
OBEQ010774822
[OBEQ] groundwater metagenome; groundwater
45
121
+
Pro
CGG
[ENA]
¢þ
>WENV180267478
OBEQ011859175
[OBEQ] groundwater metagenome; groundwater
301
377
+
Pro
CGG
[ENA]
¢þ
>WENV180321139
OBKQ01125199
[OBKQ] soil metagenome; Clay
157
81
-
Pro
CGG
[ENA]
¢þ
>WENV180343496
OBLK01026277
[OBLK] soil metagenome; Clay
254
330
+
Pro
CGG
[ENA]
¢þ
>WENV180353332
OBLQ010697358
[OBLQ] soil metagenome; soil
150
74
-
Pro
CGG
[ENA]
¢þ
>WENV180358885
OBNQ01044476
[OBNQ] marine metagenome; ENVO 00002150
425
349
-
Pro
CGG
[ENA]
¢þ
>WENV180363517
OBNY01083699
[OBNY] marine metagenome; ENVO:00002010
249
173
-
Pro
CGG
[ENA]
¢þ
>WENV180387420
OBPE01038803
[OBPE] marine metagenome; Sterile flask
50
126
+
Pro
CGG
[ENA]
¢þ
>WENV180397880
OBPZ01019779
[OBPZ] marine metagenome; ENVO:00002010
569
493
-
Pro
CGG
[ENA]
¢þ
>WENV180593136
OCOX01001779
[OCOX] marine metagenome; ENVO:00002010
1200
1276
+
Pro
CGG
[ENA]
¢þ
>WENV181123075
OEFO01078077
[OEFO] soil metagenome; soil
129
53
-
Pro
CGG
[ENA]
¢þ
>WENV181162565
OEIO01000983
[OEIO] marine metagenome; sea ice
3094
3170
+
Pro
CGG
[ENA]
¢þ
>WENV181165556
OEIS01031780
[OEIS] soil metagenome; soil
310
234
-
Pro
CGG
[ENA]
¢þ
>WENV181171415
OEIV010222474
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
450
374
-
Pro
CGG
[ENA]
¢þ
>WENV181227300
OFDN01005649
[OFDN] hot springs metagenome; Water
891
815
-
Pro
CGG
[ENA]
¢þ
>WENV181307872
OFIS01000010
[OFIS] sludge metagenome; sludge
23227
23303
+
Pro
CGG
[ENA]
¢þ
>WENV181307994
OFIS01000088
[OFIS] sludge metagenome; sludge
92164
92240
+
Pro
CGG
[ENA]
¢þ
>WENV181308194
OFIS01000601
[OFIS] sludge metagenome; sludge
6207
6131
-
Pro
CGG
[ENA]
¢þ
>WENV181311476
OFJB01002695
[OFJB] sludge metagenome; sludge
3004
2928
-
Pro
CGG
[ENA]
¢þ
>WENV181312014
OFJB01032227
[OFJB] sludge metagenome; sludge
1
77
+
Pro
CGG
[ENA]
¢þ
>WENV181415299
OGCL01007506
[OGCL] hot springs metagenome; Hot spring water
4037
3961
-
Pro
CGG
[ENA]
¢þ
>W141200953
AZAM01000001
Alphaproteobacteria
Mesorhizobium japonicum R7A [AZAM]
948538
948462
-
Pro
CGG
[ENA]
¡û
>W141213989
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
176844
176768
-
Pro
CGG
[ENA]
¡û
>W141266840
CCNB01000045
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
286154
286078
-
Pro
CGG
[ENA]
¡û
>W141277497
JAEQ01000004
Alphaproteobacteria
Chelativorans sp. J32 [JAEQ]
39186
39110
-
Pro
CGG
[ENA]
¡û
>C08007896
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
3125339
3125415
+
Pro
CGG
[Ensembl]
¡û
>WENV183623113
OOFX01011086
[OOFX] marine metagenome; sea ice
200
124
-
Pro
CGG
[ENA]
¢þ
>WENV183623470
OOGA01002739
[OOGA] marine metagenome; sea ice
136
60
-
Pro
CGG
[ENA]
¢þ
>WENV183671046
ORJL011021062
[ORJL] groundwater metagenome; groundwater
3
79
+
Pro
CGG
[ENA]
¢þ
>WENV183677833
ORJL011803332
[ORJL] groundwater metagenome; groundwater
472
396
-
Pro
CGG
[ENA]
¢þ
>WENV183683539
ORMF010587101
[ORMF] groundwater metagenome; groundwater
503
579
+
Pro
CGG
[ENA]
¢þ
>WENV183741081
PJUF01037375
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
328
404
+
Pro
CGG
[ENA]
¢þ
>WENV170135271
CENU01191704
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1221
1145
-
Pro
CGG
[ENA]
¢þ
>WENV170328916
CESV01059335
[CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
729
805
+
Pro
CGG
[ENA]
¢þ
>WENV170485101
CEVN01074357
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2351
2427
+
Pro
CGG
[ENA]
¢þ
>WENV170529197
CEWJ01112645
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2110
2186
+
Pro
CGG
[ENA]
¢þ
>WENV170551572
CXWJ01012955
[CXWJ] wastewater metagenome; activated sludge
4666
4742
+
Pro
CGG
[ENA]
¢þ
>WENV170767584
LXNH01003180
[LXNH] seawater metagenome; marine seawater
370
294
-
Pro
CGG
[ENA]
¢þ
>WENV170802838
MDSW01020162
[MDSW] marine metagenome; seawater
832614
832538
-
Pro
CGG
[ENA]
¢þ
>WENV170861449
MDTB01064597
[MDTB] marine metagenome; seawater
10791
10715
-
Pro
CGG
[ENA]
¢þ
>WENV170900115
MDTD01149412
[MDTD] marine metagenome; seawater
373958
374034
+
Pro
CGG
[ENA]
¢þ
>WENV171003769
NNBV01000699
[NNBV] plant metagenome; symbiotic tissue sample KVS11
97083
97159
+
Pro
CGG
[ENA]
¢þ
>C181063222
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
1494841
1494765
-
Pro
CGG
-
¡û
>C191014017
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
5179344
5179420
+
Pro
CGG
-
¡û
>C191125594
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
5385858
5385782
-
Pro
CGG
-
¡û
>C191125625
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
3098334
3098410
+
Pro
CGG
-
¡û
>W141815790
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
844428
844504
+
Pro
CGG
[ENA]
¡û
>W1910840160
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
635089
635165
+
Pro
CGG
[ENA]
¡û
>W1910840310
MZXX01000014
Alphaproteobacteria
Mesorhizobium erdmanii Opo-242 [MZXX]
1005517
1005593
+
Pro
CGG
[ENA]
¡û
>W1910847650
NBDP01000015
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
261890
261966
+
Pro
CGG
[ENA]
¡û
>W1911148368
NPEU01000115
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
13061
12985
-
Pro
CGG
[ENA]
¡û
>W1911148515
NPEX01000161
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
7668
7744
+
Pro
CGG
[ENA]
¡û
>W1911242191
NSFO01000004
Alphaproteobacteria
Mesorhizobium loti R7ANSxCC1192 [NSFO]
330370
330446
+
Pro
CGG
[ENA]
¡û
>W1911242246
NSFP01000003
Alphaproteobacteria
Mesorhizobium loti R7ANSxAA22 [NSFP]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242347
NSFR01000005
Alphaproteobacteria
Mesorhizobium loti R7ANSx3859 [NSFR]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242393
NSFS01000002
Alphaproteobacteria
Mesorhizobium loti R7ANSx1497 [NSFS]
226830
226754
-
Pro
CGG
[ENA]
¡û
>W1911242453
NSFT01000004
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
137786
137710
-
Pro
CGG
[ENA]
¡û
>W1911243070
NSGG01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
449532
449608
+
Pro
CGG
[ENA]
¡û
>W1911682382
QKOD01000002
Alphaproteobacteria
Mesorhizobium japonicum Opo-235 [QKOD]
913562
913638
+
Pro
CGG
[ENA]
¡û
>W1911695515
QMBQ01000001
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
529797
529873
+
Pro
CGG
[ENA]
¡û
>W1810073506
PEGG01000022
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
7525
7601
+
Pro
CGG
[ENA]
¡û
>W1810192915
PKMZ01000004
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
79366
79290
-
Pro
CGG
[ENA]
¡û
>W1810676916
QKMI01000014
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
90496
90572
+
Pro
CGG
[ENA]
¡û
>W1810698983
QMBP01000001
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
782318
782242
-
Pro
CGG
[ENA]
¡û
>W1810789372
QRGO01000002
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
598420
598344
-
Pro
CGG
[ENA]
¡û
>C151094744
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2919234
2919310
+
Pro
CGG
-
¡û
>WENV030927
AACY021323136
Marine microbial communities from Global Ocean Sampling (GOS)
309
387
+
Pro
CGG
[ENA]
>ENV09001069
ABSQ01025447
Freshwater sediment metagenome lwMethenol_C1
648
572
-
Pro
CGG
[ENA]
¡û
>C11117268
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
3286288
3286364
+
Pro
CGG
[Ensembl]
¡û
>C161001643
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
2279789
2279865
+
Pro
CGG
[Ensembl]
¡û
>WENV059244
AACY023360148
Marine microbial communities from Global Ocean Sampling (GOS)
496
574
+
Pro
CGG
[ENA]
>WENV062321
AACY023457280
Marine microbial communities from Global Ocean Sampling (GOS)
209
287
+
Pro
CGG
[ENA]
>W121103201
AKZI01000008
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
5436
5360
-
Pro
CGG
[ENA]
¡û
>W1610083671
CCND01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
200170
200094
-
Pro
CGG
[ENA]
¡û
>W1610550636
JXTJ01000010
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
238763
238687
-
Pro
CGG
[ENA]
¡û
>W1610617164
LGSZ01000028
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
133094
133018
-
Pro
CGG
[ENA]
¡û
>W1610631758
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
154698
154622
-
Pro
CGG
[ENA]
¡û
>W1610720380
LMAR01000051
Alphaproteobacteria
Bosea thiooxidans [LMAR]
16907
16831
-
Pro
CGG
[ENA]
¡û
>W1610726585
LMFS01000001
Alphaproteobacteria
Pseudolabrys sp. Root1462 [LMFS]
2837818
2837742
-
Pro
CGG
[ENA]
¡û
>W1610753625
LNER01000241
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2647
2723
+
Pro
CGG
[ENA]
¡û
>W1610858050
LQQT01000017
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
31589
31513
-
Pro
CGG
[ENA]
¡û
>W1610912442
LSIG01000150
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
14402
14326
-
Pro
CGG
[ENA]
¡û
>W1610913128
LSIY01000231
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
9285
9361
+
Pro
CGG
[ENA]
¡û
>W1610913658
LSJL01000113
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
62366
62290
-
Pro
CGG
[ENA]
¡û
>W1610913910
LSJR01000269
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
121
197
+
Pro
CGG
[ENA]
¡û
>W1610914085
LSJV01000176
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
74432
74508
+
Pro
CGG
[ENA]
¡û
>W1610914883
LSKN01000235
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
74623
74699
+
Pro
CGG
[ENA]
¡û
>W1611020092
LYTJ01000023
Alphaproteobacteria
Mesorhizobium loti [LYTJ]
258242
258318
+
Pro
CGG
[ENA]
¡û
>W1611044227
LZTH01000012
Alphaproteobacteria
Mesorhizobium loti [LZTH]
673661
673585
-
Pro
CGG
[ENA]
¡û
>W1611044284
LZTI01000012
Alphaproteobacteria
Mesorhizobium loti [LZTI]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1611044339
LZTJ01000012
Alphaproteobacteria
Mesorhizobium loti [LZTJ]
647572
647648
+
Pro
CGG
[ENA]
¡û
>W1611044439
LZTL01000023
Alphaproteobacteria
Mesorhizobium loti [LZTL]
180749
180825
+
Pro
CGG
[ENA]
¡û
>W1710088688
CCND01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
200170
200094
-
Pro
CGG
[ENA]
¡û
>W1710538959
FNUY01000007
Alphaproteobacteria
Bosea lathyri [FNUY]
292484
292560
+
Pro
CGG
[ENA]
¡û
>W1710544030
FOAN01000006
Alphaproteobacteria
Bosea lupini [FOAN]
189787
189863
+
Pro
CGG
[ENA]
¡û
>W1710561262
FOOA01000003
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
236773
236849
+
Pro
CGG
[ENA]
¡û
>W1710564931
FOQV01000007
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
214666
214742
+
Pro
CGG
[ENA]
¡û
>W1710601633
FUXL01000031
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
7353
7429
+
Pro
CGG
[ENA]
¡û
>W1710660471
JXTJ01000010
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
238763
238687
-
Pro
CGG
[ENA]
¡û
>W1710742778
LGSZ01000028
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
133094
133018
-
Pro
CGG
[ENA]
¡û
>W1710764643
LIOL01000004
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
154698
154622
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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