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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199859 (10 seq.)
>WENV170600771
FUWD010142098
[FUWD] metagenome; unknown
194
270
+
Met
CAT
[ENA]
¡û
>WENV170626456
FUWD013222999
[FUWD] metagenome; unknown
420
344
-
Met
CAT
[ENA]
¡û
>SRA1017314
SRR035082.118269
454 Sequencing (SRP001803)
61
137
+
Met
CAT
[SRA]
>SRA1029630
SRR035087.153709
454 Sequencing (SRP001808)
194
270
+
Met
CAT
[SRA]
>SRA1030534
SRR035087.291365
454 Sequencing (SRP001808)
459
535
+
Met
CAT
[SRA]
>SRA1030846
SRR035087.338237
454 Sequencing (SRP001808)
165
241
+
Met
CAT
[SRA]
>SRA1031906
SRR035087.509952
454 Sequencing (SRP001808)
225
301
+
Met
CAT
[SRA]
>SRA1032034
SRR035087.538498
454 Sequencing (SRP001808)
73
-1
-
Met
CAT
[SRA]
>W1511615631
LCNE01000011
Unclassified
candidate division WWE3 bacterium GW2011_GWA2_46_9 [LCNE]
7447
7523
+
Met
CAT
[ENA]
¡û
>W1511615720
LCNH01000015
Unclassified
candidate division WWE3 bacterium GW2011_GWC1_47_10 [LCNH]
12945
12869
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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