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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199874 (11 seq.)
>W1711700376
MSMP01000073
Bacteroidota
Tenacibaculum agarivorans HZ1 [MSMP]
2057
2133
+
Ala
TGC
[ENA]
¡û
>WENV183701273
PDMW01341208
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
232
306
+
Ala
TGC
[ENA]
¡û
>WENV170276565
CERN01068519
[CERN] marine metagenome genome assembly TARA_066_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
167
91
-
Ala
TGC
[ENA]
¡û
>WENV170385412
CETY01066700
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
289
+
Ala
TGC
[ENA]
¡û
>WENV170601252
FUWD010163853
[FUWD] metagenome; unknown
55
131
+
Ala
TGC
[ENA]
¡û
>WENV170886062
MDTC01213810
[MDTC] marine metagenome; seawater
1911
1835
-
Ala
TGC
[ENA]
¡û
>C181220991
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
1155140
1155214
+
Ala
TGC
-
¡û
>C181221000
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
1762424
1762498
+
Ala
TGC
-
¡û
>C181221014
LT899436
Bacteroidota
Tenacibaculum jejuense type strain: KCTC 22618 [LT899436]
3808029
3807955
-
Ala
TGC
-
¡û
>C231374612
CP096884
Bacteroidota
Seonamhaeicola sp. ML3 [CP096884]
2447049
2447123
+
Ala
TGC
-
¡û
>C231374634
CP096884
Bacteroidota
Seonamhaeicola sp. ML3 [CP096884]
625645
625571
-
Ala
TGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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