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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200021 (64 seq.)
>W1711229397
LXYK01000003
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
87380
87304
-
Arg
CCG
[ENA]
¡û
>C011070
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
2146891
2146967
+
Arg
CCG
[Ensembl]
¡û
>w012013
AALZ01000009
Alphaproteobacteria
Sulfitobacter sp. NAS-14.1 [AALZ]
65279
65357
+
Arg
CCG
[ENA]
¡û
>WENV180050362
MPLU02132579
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
1463
1539
+
Arg
CCG
[ENA]
¡û
>WENV180068402
MPLZ02045915
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
469
545
+
Arg
CCG
[ENA]
¡û
>WENV180082097
MPMC02184612
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
153
77
-
Arg
CCG
[ENA]
¡û
>W08005749
ABID01000003
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
89627
89703
+
Arg
CCG
[ENA]
¡û
>W141171321
AXZR01000006
Alphaproteobacteria
Sulfitobacter pontiacus 3SOLIMAR09 [AXZR]
187558
187482
-
Arg
CCG
[ENA]
¡û
>WENV182543920
OJBD01001196
[OJBD] seawater metagenome; Sea water
286
362
+
Arg
CCG
[ENA]
¡û
>WENV182547145
OJBR01002390
[OJBR] seawater metagenome; Sea water
2096
2020
-
Arg
CCG
[ENA]
¡û
>WENV182555461
OJDA01001647
[OJDA] seawater metagenome; Sea water
645
721
+
Arg
CCG
[ENA]
¡û
>WENV182555759
OJDD01000379
[OJDD] seawater metagenome; Sea water
12288
12364
+
Arg
CCG
[ENA]
¡û
>WENV182557683
OJDK01002181
[OJDK] seawater metagenome; Sea water
2827
2903
+
Arg
CCG
[ENA]
¡û
>WENV182558974
OJDN01027912
[OJDN] seawater metagenome; Sea water
101
177
+
Arg
CCG
[ENA]
¡û
>WENV182559790
OJDQ01005001
[OJDQ] seawater metagenome; Sea water
1629
1705
+
Arg
CCG
[ENA]
¡û
>WENV182560816
OJDV01000020
[OJDV] seawater metagenome; Sea water
162421
162497
+
Arg
CCG
[ENA]
¡û
>WENV182563892
OJED01001568
[OJED] seawater metagenome; Sea water
2283
2207
-
Arg
CCG
[ENA]
¡û
>WENV182567020
OJEN01000518
[OJEN] seawater metagenome; Sea water
10399
10475
+
Arg
CCG
[ENA]
¡û
>WENV182567623
OJEO01026436
[OJEO] seawater metagenome; Sea water
123
47
-
Arg
CCG
[ENA]
¡û
>WENV182583750
OJHE01001785
[OJHE] seawater metagenome; Sea water
106
30
-
Arg
CCG
[ENA]
¡û
>WENV182586095
OJHJ01001134
[OJHJ] seawater metagenome; Sea water
468
392
-
Arg
CCG
[ENA]
¡û
>WENV182592942
OJIS01001801
[OJIS] seawater metagenome; Sea water
2466
2542
+
Arg
CCG
[ENA]
¡û
>WENV183057582
OLHL01012177
[OLHL] seawater metagenome; Sea water
316
392
+
Arg
CCG
[ENA]
¡û
>WENV183810155
PVBE011455051
[PVBE] marine metagenome; water
57200
57124
-
Arg
CCG
[ENA]
¡û
>WENV170118605
CENJ01076948
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
358
282
-
Arg
CCG
[ENA]
¡û
>WENV170228813
CEQG01044141
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2233
2309
+
Arg
CCG
[ENA]
¡û
>WENV170308035
CESK01046324
[CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
330
254
-
Arg
CCG
[ENA]
¡û
>WENV170537305
CEWQ01059997
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
419
495
+
Arg
CCG
[ENA]
¡û
>WENV170605264
FUWD010462879
[FUWD] metagenome; unknown
642
718
+
Arg
CCG
[ENA]
¡û
>WENV170759263
LUMS01008776
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
448
524
+
Arg
CCG
[ENA]
¡û
>WENV170763648
LWDU01015238
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
3506
3582
+
Arg
CCG
[ENA]
¡û
>WENV170783010
MAAC01012815
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7200
7124
-
Arg
CCG
[ENA]
¡û
>WENV170925790
MDTG01090071
[MDTG] marine metagenome; seawater
2825
2901
+
Arg
CCG
[ENA]
¡û
>C181123384
CP025808
Alphaproteobacteria
Sulfitobacter sp. SK025 [CP025808]
1855753
1855829
+
Arg
CCG
-
¡û
>C191018054
CP020694
Alphaproteobacteria
Sulfitobacter sp. D7 [CP020694]
1966182
1966106
-
Arg
CCG
-
¡û
>W09102733
AAIG01000002
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
3581
3657
+
Arg
CCG
[ENA]
¡û
>W141807896
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
1290817
1290893
+
Arg
CCG
[ENA]
¡û
>W1910443065
FWFT01000001
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
522365
522289
-
Arg
CCG
[ENA]
¡û
>W1910814101
MVIP01000001
Alphaproteobacteria
Sulfitobacter pontiacus SAORIC-395 [MVIP]
366234
366158
-
Arg
CCG
[ENA]
¡û
>W1910814127
MVIQ01000001
Alphaproteobacteria
Sulfitobacter indolifex SAORIC-263 [MVIQ]
201142
201218
+
Arg
CCG
[ENA]
¡û
>W1810424135
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
1290817
1290893
+
Arg
CCG
[ENA]
¡û
>W1810580444
QETF01000005
Alphaproteobacteria
Salibaculum griseiflavum WDS4C29 [QETF]
154379
154455
+
Arg
CCG
[ENA]
¡û
>W2010604350
JABJVX010000013
Alphaproteobacteria
Rhodophyticola sp. DY48A3-103 [JABJVX]
1350
1274
-
Arg
CCG
[ENA]
¡û
>W2010727299
JACIFR010000001
Alphaproteobacteria
Sulfitobacter sp. N5S [JACIFR]
1166737
1166661
-
Arg
CCG
[ENA]
¡û
>W2010917730
MVIP01000001
Alphaproteobacteria
Sulfitobacter pontiacus SAORIC-395 [MVIP]
366234
366158
-
Arg
CCG
[ENA]
¡û
>W2010917756
MVIQ01000001
Alphaproteobacteria
Sulfitobacter indolifex SAORIC-263 [MVIQ]
201142
201218
+
Arg
CCG
[ENA]
¡û
>W2011750852
SZNL01000016
Alphaproteobacteria
Sulfitobacter sp. 15WGC [SZNL]
28091
28167
+
Arg
CCG
[ENA]
¡û
>W2110548078
JAGHRH010000001
Alphaproteobacteria
Sulfitobacter sp. R18_2 [JAGHRH]
429618
429694
+
Arg
CCG
[ENA]
¡û
>W2110644987
JAHTBK010000001
Alphaproteobacteria
Hasllibacter sp. MH4015 [JAHTBK]
1340522
1340598
+
Arg
CCG
[ENA]
¡û
>W2110660596
JAHXDN010000003
Alphaproteobacteria
Roseobacter sp. YSTF-M11 [JAHXDN]
520112
520188
+
Arg
CCG
[ENA]
¡û
>C211366965
CP079194
Alphaproteobacteria
Jannaschia sp. J12C1-MA-4 [CP079194]
2022070
2022146
+
Arg
CCG
-
¡û
>C231169322
CP081102
Alphaproteobacteria
Rhodobacteraceae bacterium M385 [CP081102]
1852594
1852670
+
Arg
CCG
-
¡û
>C231169556
CP081116
Alphaproteobacteria
Sulfitobacter pontiacus W028 [CP081116]
1832249
1832325
+
Arg
CCG
-
¡û
>C231181775
CP083564
Alphaproteobacteria
Sulfitobacter sp. W027 [CP083564]
1499730
1499806
+
Arg
CCG
-
¡û
>C231201404
CP084951
Alphaproteobacteria
Sulfitobacter indolifex DSM 14862 [CP084951]
1487159
1487235
+
Arg
CCG
-
¡û
>C231204104
CP085144
Alphaproteobacteria
Sulfitobacter dubius DSM 109990 [CP085144]
1566346
1566422
+
Arg
CCG
-
¡û
>C231204192
CP085167
Alphaproteobacteria
Sulfitobacter sp. DSM 110093 [CP085167]
1543314
1543390
+
Arg
CCG
-
¡û
>C231498417
CP104793
Alphaproteobacteria
Rhodobacteraceae bacterium D3-12 [CP104793]
1861542
1861618
+
Arg
CCG
-
¡û
>C241011771
AP027373
Alphaproteobacteria
Sulfitobacter pontiacus BL28 [AP027373]
1747815
1747891
+
Arg
CCG
-
¡û
>W2130032664
JAGHRG010000010
Alphaproteobacteria
Sulfitobacter sp. R18_1 [JAGHRG]
405
329
-
Arg
CCG
[ENA]
¡û
>C241329282
CP136697
Alphaproteobacteria
Sulfitobacter dubius CI.11.F.A3 [CP136697]
708401
708325
-
Arg
CCG
-
¡û
>W2310023601
BSKR01000001
Alphaproteobacteria
Sulfitobacter pontiacus 191114_B17 [BSKR]
1717872
1717948
+
Arg
CCG
[ENA]
¡û
>W1611013267
LXYK01000003
Alphaproteobacteria
Sulfitobacter pontiacus [LXYK]
87380
87304
-
Arg
CCG
[ENA]
¡û
>W1710562858
FOPG01000001
Alphaproteobacteria
Sulfitobacter dubius [FOPG]
726182
726106
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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