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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200200 (70 seq.)
>W1711095768
LTHD01000048
Bacillota
Nosocomiicoccus sp. HMSC067E10 [LTHD]
641
568
-
Arg
ACG
[ENA]
¡û
>W1711107472
LTSV01000097
Bacillota
Nosocomiicoccus sp. HMSC059G07 [LTSV]
641
568
-
Arg
ACG
[ENA]
¡û
>W1711184905
LWMX01000060
Bacillota
Nosocomiicoccus sp. HMSC09A07 [LWMX]
596
523
-
Arg
ACG
[ENA]
¡û
>W1711326388
MBFG01000016
Bacillota
Nosocomiicoccus ampullae [MBFG]
11184
11111
-
Arg
ACG
[ENA]
¡û
>W1711767515
MVAB01000001
Bacillota
Vagococcus martis D7T301 [MVAB]
1154681
1154608
-
Arg
ACG
[ENA]
¡û
>W1711767524
MVAB01000001
Bacillota
Vagococcus martis D7T301 [MVAB]
1148765
1148692
-
Arg
ACG
[ENA]
¡û
>W131230134
AUHI01000026
Bacillota
Halalkalibacillus halophilus DSM 18494 [AUHI]
300
224
-
Arg
ACG
[ENA]
¡û
>C171059739
CP017267
Bacillota
Vagococcus teuberi DSM 21459 [CP017267]
105594
105667
+
Arg
ACG
-
¡û
>C171059764
CP017267
Bacillota
Vagococcus teuberi DSM 21459 [CP017267]
2141388
2141315
-
Arg
ACG
-
¡û
>C171059772
CP017267
Bacillota
Vagococcus teuberi DSM 21459 [CP017267]
2135507
2135434
-
Arg
ACG
-
¡û
>W131226260
AUEF01000023
Bacillota
Jeotgalicoccus psychrophilus DSM 19085 [AUEF]
943
1017
+
Arg
ACG
[ENA]
¡û
>W131251158
CAVG010000147
Bacillota
Nosocomiicoccus massiliensis NP2 [CAVG]
3871
3798
-
Arg
ACG
[ENA]
¡û
>WENV180428992
OBWC01007184
[OBWC] human gut metagenome; faeces
1260
1184
-
Arg
ACG
[ENA]
¢þ
>W141067345
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
848413
848489
+
Arg
ACG
[ENA]
¡û
>WENV180717816
ODGE01003564
[ODGE] human metagenome; G_DNA_Buccal mucosa
597
673
+
Arg
ACG
[ENA]
¢þ
>WENV180735198
ODGZ01088788
[ODGZ] human metagenome; G_DNA_Supragingival plaque
222
298
+
Arg
ACG
[ENA]
¢þ
>WENV180823716
ODJW01125660
[ODJW] human metagenome; G_DNA_Supragingival plaque
203
279
+
Arg
ACG
[ENA]
¢þ
>WENV180853163
ODKW01035097
[ODKW] human metagenome; G_DNA_Tongue dorsum
596
672
+
Arg
ACG
[ENA]
¢þ
>WENV180858750
ODLC01028597
[ODLC] human metagenome; G_DNA_Tongue dorsum
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV180902352
ODOK01041975
[ODOK] human metagenome; G_DNA_Tongue dorsum
508
584
+
Arg
ACG
[ENA]
¢þ
>WENV180946204
ODUD01017554
[ODUD] human metagenome; G_DNA_Tongue dorsum
164
88
-
Arg
ACG
[ENA]
¢þ
>WENV181058841
ODYL01042518
[ODYL] human metagenome; G_DNA_Tongue dorsum
164
88
-
Arg
ACG
[ENA]
¢þ
>WENV181120098
OEFJ01005067
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
595
671
+
Arg
ACG
[ENA]
¢þ
>WENV181175736
OEJQ01025518
[OEJQ] human metagenome; G_DNA_Tongue dorsum
580
656
+
Arg
ACG
[ENA]
¢þ
>WENV181181421
OEJU01037499
[OEJU] human metagenome; G_DNA_Supragingival plaque
93
17
-
Arg
ACG
[ENA]
¢þ
>WENV181403040
OFTZ01015647
[OFTZ] marine metagenome; seawater
477
401
-
Arg
ACG
[ENA]
¢þ
>WENV181426929
OGCQ01019266
[OGCQ] human gut metagenome; human gut
791
867
+
Arg
ACG
[ENA]
¢þ
>WENV181905194
OGXX01121373
[OGXX] human gut metagenome; faeces
295
219
-
Arg
ACG
[ENA]
¢þ
>WENV182399189
OIEN01037580
[OIEN] human gut metagenome; human gut
859
935
+
Arg
ACG
[ENA]
¢þ
>WENV182516251
OIWN01024211
[OIWN] human gut metagenome; faeces
681
605
-
Arg
ACG
[ENA]
¢þ
>W141263642
CCDJ010000004
Bacillota
Halobacillus karajensis trueperi [CCDJ]
105185
105261
+
Arg
ACG
[ENA]
¡û
>W141263661
CCDJ010000005
Bacillota
Halobacillus karajensis trueperi [CCDJ]
923
999
+
Arg
ACG
[ENA]
¡û
>WENV182671235
OJNL01023729
[OJNL] human gut metagenome; feces
118
42
-
Arg
ACG
[ENA]
¢þ
>W141273209
CCSE01000001
Bacillota
Jeotgalicoccus saudimassiliensis 13MG44_air [CCSE]
1263804
1263730
-
Arg
ACG
[ENA]
¡û
>WENV170008013
AMZC01000223
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
40098
40022
-
Arg
ACG
[ENA]
¢þ
>W1910899527
NGJT01000060
Bacillota
Vagococcus bubulae SS1994 [NGJT]
408
335
-
Arg
ACG
[ENA]
¡û
>W1910899716
NGJX01000003
Bacillota
Vagococcus fluvialis NCFB 2497 [NGJX]
274573
274500
-
Arg
ACG
[ENA]
¡û
>W1910899747
NGJX01000024
Bacillota
Vagococcus fluvialis NCFB 2497 [NGJX]
450
375
-
Arg
ACG
[ENA]
¡û
>W1910899934
NGKB01000016
Bacillota
Vagococcus carniphilus SS1714 [NGKB]
64721
64648
-
Arg
ACG
[ENA]
¡û
>W1911594681
PNFT01000017
Bacillota
Nosocomiicoccus massiliensis UMB0959 [PNFT]
22841
22768
-
Arg
ACG
[ENA]
¡û
>W1911640730
PXZH01000002
Bacillota
Vagococcus humatus JCM 31581 [PXZH]
660
735
+
Arg
ACG
[ENA]
¡û
>W1911640756
PXZH01000008
Bacillota
Vagococcus humatus JCM 31581 [PXZH]
351
426
+
Arg
ACG
[ENA]
¡û
>W1810756305
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
2429088
2429162
+
Arg
ACG
[ENA]
¡û
>W1810756340
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
2106270
2106196
-
Arg
ACG
[ENA]
¡û
>W1810756346
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1506359
1506285
-
Arg
ACG
[ENA]
¡û
>W1810756372
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1251642
1251568
-
Arg
ACG
[ENA]
¡û
>W1810759986
QPJV01000025
Bacillota
Vagococcus fluvialis DSM 5731 [QPJV]
2549
2624
+
Arg
ACG
[ENA]
¡û
>W1810793816
QRJY01000044
Bacillota
Vagococcus sp. AM17-17 [QRJY]
575
648
+
Arg
ACG
[ENA]
¡û
>W1810793821
QRJY01000050
Bacillota
Vagococcus sp. AM17-17 [QRJY]
294
221
-
Arg
ACG
[ENA]
¡û
>W1810868332
QTZC01000018
Bacillota
Melissococcus sp. OM08-11BH [QTZC]
554
627
+
Arg
ACG
[ENA]
¡û
>W1810884788
QUMW01000004
Bacillota
Jeotgalicoccus halotolerans DSM 17274 [QUMW]
729
803
+
Arg
ACG
[ENA]
¡û
>C151089599
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
98105
98181
+
Arg
ACG
[Ensembl]
¡û
>C151089618
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
323625
323701
+
Arg
ACG
[Ensembl]
¡û
>C151089655
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
3062498
3062422
-
Arg
ACG
[Ensembl]
¡û
>C151089667
CP012024
Bacillota
Bacillus smithii DSM 4216 [CP012024]
2637631
2637555
-
Arg
ACG
[Ensembl]
¡û
>C121005022
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
71830
71906
+
Arg
ACG
[Ensembl]
¡û
>W121000670
ACWF01000002
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
2219
2143
-
Arg
ACG
[ENA]
¡û
>W121000683
ACWF01000017
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
1389
1465
+
Arg
ACG
[ENA]
¡û
>W121000735
ACWF01000105
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
795
719
-
Arg
ACG
[ENA]
¡û
>W121000746
ACWF01000129
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
945
869
-
Arg
ACG
[ENA]
¡û
>W1610073558
BCVY01000062
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
495
419
-
Arg
ACG
[ENA]
¡û
>W1610073581
BCVY01000072
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
304
228
-
Arg
ACG
[ENA]
¡û
>W1610073606
BCVY01000083
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
9823
9747
-
Arg
ACG
[ENA]
¡û
>W1610073627
BCVY01000139
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
524
600
+
Arg
ACG
[ENA]
¡û
>W1611063241
MBFG01000016
Bacillota
Nosocomiicoccus ampullae [MBFG]
11184
11111
-
Arg
ACG
[ENA]
¡û
>W1710070676
BCVY01000062
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
495
419
-
Arg
ACG
[ENA]
¡û
>W1710070699
BCVY01000072
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
304
228
-
Arg
ACG
[ENA]
¡û
>W1710070724
BCVY01000083
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
9823
9747
-
Arg
ACG
[ENA]
¡û
>W1710070745
BCVY01000139
Bacillota
Bacillus smithii NBRC 15311 [BCVY]
524
600
+
Arg
ACG
[ENA]
¡û
>W1710559515
FOMR01000013
Bacillota
Lentibacillus persicus [FOMR]
89641
89717
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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