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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200537 (15 seq.)
>W1711284820
LZRN01000039
Bacteroidota
Gelidibacter algens [LZRN]
2721
2647
-
Arg
TCG
[ENA]
¡û
>W131211409
ATMR01000007
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
100850
100774
-
Arg
TCG
[ENA]
¡û
>W131235294
AULL01000015
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
88062
87986
-
Arg
TCG
[ENA]
¡û
>WENV180038825
LLBY010007067
[LLBY] soil metagenome; soil from tomato rhizosphere
51079
51153
+
Arg
TCG
[ENA]
¢þ
>WENV180041726
LLBZ010348143
[LLBZ] soil metagenome; soil from tomato rhizosphere
1425
1351
-
Arg
TCG
[ENA]
¢þ
>WENV180285597
OBID01551471
[OBID] metagenome; sludge
201
127
-
Arg
TCG
[ENA]
¢þ
>C181122728
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
1795927
1795853
-
Arg
TCG
-
¡û
>C191023117
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
739540
739466
-
Arg
TCG
-
¡û
>C191116466
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
2267289
2267363
+
Arg
TCG
-
¡û
>C191156045
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
36008
36082
+
Arg
TCG
-
¡û
>W1910923765
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
252205
252131
-
Arg
TCG
[ENA]
¡û
>W1810788331
QREI01000001
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
332163
332089
-
Arg
TCG
[ENA]
¡û
>C151018448
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
15061
14985
-
Arg
TCG
[Ensembl]
¡û
>W1611042605
LZRN01000039
Bacteroidota
Gelidibacter algens [LZRN]
2721
2647
-
Arg
TCG
[ENA]
¡û
>W1710598925
FTOI01000011
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
71041
71115
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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