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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200607 (121 seq.)
>W1710872635
LMMD01000009
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
58642
58716
+
Arg
TCT
[ENA]
¡û
>W1710880085
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
391468
391545
+
Arg
TCT
[ENA]
¡û
>W1710880221
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
573915
573839
-
Arg
TCT
[ENA]
¡û
>W1711003883
LQIH01000011
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
480
406
-
Arg
TCT
[ENA]
¡û
>W1711003927
LQII01000011
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
425
351
-
Arg
TCT
[ENA]
¡û
>W1711003974
LQIJ01000009
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
125618
125692
+
Arg
TCT
[ENA]
¡û
>W1711004605
LQIW01000049
Actinomycetota
Mycobacterium sp. IS-1590 [LQIW]
19961
19887
-
Arg
TCT
[ENA]
¡û
>W1711049717
LRQY01000037
Actinomycetota
Prescottella equi [LRQY]
226356
226432
+
Arg
TCT
[ENA]
¡û
>W1711049743
LRQZ01000011
Actinomycetota
Prescottella equi [LRQZ]
39859
39935
+
Arg
TCT
[ENA]
¡û
>W1711050019
LRRF01000039
Actinomycetota
Prescottella equi [LRRF]
55009
55085
+
Arg
TCT
[ENA]
¡û
>W1711080610
LSRE01000003
Actinomycetota
Tsukamurella pseudospumae [LSRE]
69252
69178
-
Arg
TCT
[ENA]
¡û
>W1711080678
LSRF01000044
Actinomycetota
Tsukamurella pseudospumae [LSRF]
121224
121150
-
Arg
TCT
[ENA]
¡û
>W1711080775
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
873319
873243
-
Arg
TCT
[ENA]
¡û
>W1711080836
LSRI01000024
Actinomycetota
Tsukamurella pulmonis [LSRI]
54533
54607
+
Arg
TCT
[ENA]
¡û
>W1711171867
LWBN01000012
Actinomycetota
Prescottella equi [LWBN]
529566
529642
+
Arg
TCT
[ENA]
¡û
>W1711179572
LWHT01000001
Actinomycetota
Prescottella equi [LWHT]
589507
589583
+
Arg
TCT
[ENA]
¡û
>W1711179622
LWHU01000001
Actinomycetota
Prescottella equi [LWHU]
531652
531728
+
Arg
TCT
[ENA]
¡û
>W1711179734
LWHW01000002
Actinomycetota
Prescottella equi [LWHW]
341057
341133
+
Arg
TCT
[ENA]
¡û
>W1711179790
LWHX01000001
Actinomycetota
Prescottella equi [LWHX]
574052
573976
-
Arg
TCT
[ENA]
¡û
>W1711179832
LWHY01000001
Actinomycetota
Prescottella equi [LWHY]
445907
445983
+
Arg
TCT
[ENA]
¡û
>W1711179902
LWHZ01000002
Actinomycetota
Prescottella equi [LWHZ]
157931
157855
-
Arg
TCT
[ENA]
¡û
>W1711179945
LWIA01000001
Actinomycetota
Prescottella equi [LWIA]
582357
582281
-
Arg
TCT
[ENA]
¡û
>W1711180003
LWIB01000002
Actinomycetota
Prescottella equi [LWIB]
158949
158873
-
Arg
TCT
[ENA]
¡û
>W1711180057
LWIC01000002
Actinomycetota
Prescottella equi [LWIC]
158241
158165
-
Arg
TCT
[ENA]
¡û
>W1711192241
LWTO01000050
Actinomycetota
Prescottella equi [LWTO]
370
444
+
Arg
TCT
[ENA]
¡û
>W1711192259
LWTP01000002
Actinomycetota
Prescottella equi [LWTP]
589507
589583
+
Arg
TCT
[ENA]
¡û
>W1711192312
LWTQ01000004
Actinomycetota
Prescottella equi [LWTQ]
272116
272192
+
Arg
TCT
[ENA]
¡û
>W1711192380
LWTR01000099
Actinomycetota
Prescottella equi [LWTR]
872
796
-
Arg
TCT
[ENA]
¡û
>W1711192444
LWTS01000011
Actinomycetota
Prescottella equi [LWTS]
59543
59619
+
Arg
TCT
[ENA]
¡û
>W1711192462
LWTT01000002
Actinomycetota
Prescottella equi [LWTT]
60202
60278
+
Arg
TCT
[ENA]
¡û
>W1711192512
LWTU01000003
Actinomycetota
Prescottella equi [LWTU]
201349
201273
-
Arg
TCT
[ENA]
¡û
>W1711192556
LWTV01000001
Actinomycetota
Prescottella equi [LWTV]
527370
527446
+
Arg
TCT
[ENA]
¡û
>W1711192623
LWTW01000002
Actinomycetota
Prescottella equi [LWTW]
158378
158302
-
Arg
TCT
[ENA]
¡û
>W1711192667
LWTX01000001
Actinomycetota
Prescottella equi [LWTX]
613520
613444
-
Arg
TCT
[ENA]
¡û
>W1711192709
LWTY01000001
Actinomycetota
Prescottella equi [LWTY]
582613
582689
+
Arg
TCT
[ENA]
¡û
>W1711207176
LXFG01000001
Actinomycetota
Prescottella equi [LXFG]
452867
452943
+
Arg
TCT
[ENA]
¡û
>W1711207226
LXFH01000001
Actinomycetota
Prescottella equi [LXFH]
271658
271734
+
Arg
TCT
[ENA]
¡û
>W1711207279
LXFI01000001
Actinomycetota
Prescottella equi [LXFI]
526718
526794
+
Arg
TCT
[ENA]
¡û
>W1711279481
LZKP01000082
Actinomycetota
Mycobacterium sp. E740 [LZKP]
19733
19659
-
Arg
TCT
[ENA]
¡û
>W1711325144
MBEF01000047
Actinomycetota
Mycolicibacterium vulneris [MBEF]
58028
58102
+
Arg
TCT
[ENA]
¡û
>W1711428424
MIHF01000024
Actinomycetota
Mycolicibacterium porcinum [MIHF]
6237
6311
+
Arg
TCT
[ENA]
¡û
>W1711772847
MVHS01000029
Actinomycetota
Mycolicibacterium insubricum [MVHS]
35300
35226
-
Arg
TCT
[ENA]
¡û
>W1711773435
MVIG01000004
Actinomycetota
Mycolicibacterium porcinum [MVIG]
334894
334968
+
Arg
TCT
[ENA]
¡û
>W131087832
AODO01000001
Actinomycetota
Rhodococcus triatomae BKS 15-14 [AODO]
278679
278603
-
Arg
TCT
[ENA]
¡û
>W131164608
ARAX01000011
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
265855
265931
+
Arg
TCT
[ENA]
¡û
>W131185034
ARTK01000017
Actinomycetota
Mycobacterium sp. 360MFTsu5.1 [ARTK]
220032
220106
+
Arg
TCT
[ENA]
¡û
>W141037960
ALQA01000074
Actinomycetota
Mycolicibacterium vaccae ATCC 25954 [ALQA]
4091
4015
-
Arg
TCT
[ENA]
¡û
>W141063614
APJC01000027
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [APJC]
181667
181743
+
Arg
TCT
[ENA]
¡û
>W141233313
BAVQ01000003
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
371192
371268
+
Arg
TCT
[ENA]
¡û
>W141262141
CCBG010000002
Actinomycetota
Mycolicibacterium vulneris [CCBG]
2434094
2434020
-
Arg
TCT
[ENA]
¡û
>W141284051
JALM01000032
Actinomycetota
Sciscionella sp. SE31 [JALM]
6692
6768
+
Arg
TCT
[ENA]
¡û
>WENV183092660
OLLI01000780
[OLLI] soil metagenome; soil
3716
3792
+
Arg
TCT
[ENA]
¢þ
>WENV170552642
CXWK01000897
[CXWK] wastewater metagenome; activated sludge
193783
193859
+
Arg
TCT
[ENA]
¢þ
>WENV170975811
MTKZ01002503
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
55803
55879
+
Arg
TCT
[ENA]
¢þ
>C181160023
CP027793
Actinomycetota
Prescottella equi DSSKP-R-001 [CP027793]
3429456
3429532
+
Arg
TCT
-
¡û
>C181215398
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
1197197
1197271
+
Arg
TCT
-
¡û
>C191139045
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
740223
740299
+
Arg
TCT
-
¡û
>C191165994
CP039432
Actinomycetota
Rhodococcus sp. SGAir0479 [CP039432]
2420421
2420497
+
Arg
TCT
-
¡û
>C191193491
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
22940
22866
-
Arg
TCT
-
¡û
>C191208549
LR134355
Actinomycetota
Mycolicibacterium chitae NCTC10485 [LR134355]
1579080
1579006
-
Arg
TCT
-
¡û
>W141702441
JMLM01000006
Actinomycetota
Mycobacterium sp. UNC410CL29Cvi84 [JMLM]
214327
214253
-
Arg
TCT
[ENA]
¡û
>W141702538
JMLO01000002
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
98073
97997
-
Arg
TCT
[ENA]
¡û
>W141806990
JPOC01000005
Actinomycetota
Prescottella defluvii [JPOC]
57116
57192
+
Arg
TCT
[ENA]
¡û
>W141817534
JQKU01000008
Actinomycetota
Mycobacterium sp. UNC280MFTsu5.1 [JQKU]
213426
213500
+
Arg
TCT
[ENA]
¡û
>W1910401380
FUWC01000001
Actinomycetota
Mycolicibacterium boenickei CIP107829 [FUWC]
3914990
3915064
+
Arg
TCT
[ENA]
¡û
>W1911492031
OBDL01000007
Actinomycetota
Rhodococcus sp. OK270 [OBDL]
159006
159080
+
Arg
TCT
[ENA]
¡û
>W1911534616
OLMG01000004
Actinomycetota
Mycolicibacterium porcinum CSURP1564 [OLMG]
429259
429333
+
Arg
TCT
[ENA]
¡û
>W1911717730
QQQF01000175
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
25305
25379
+
Arg
TCT
[ENA]
¡û
>W1810157277
PJBV01000010
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
489583
489658
+
Arg
TCT
[ENA]
¡û
>W1810173592
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
2004442
2004517
+
Arg
TCT
[ENA]
¡û
>W1810338853
PUTW01018511
Actinomycetota
Mycobacterium sp. ITM-2016-00317 [PUTW]
1525
1451
-
Arg
TCT
[ENA]
¡û
>W1810477514
QAOW01000001
Actinomycetota
Rhodococcus sp. OK519 [QAOW]
1011863
1011789
-
Arg
TCT
[ENA]
¡û
>W1810477664
QAOZ01000007
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
159006
159080
+
Arg
TCT
[ENA]
¡û
>W1810659107
QJJU01000015
Actinomycetota
Mycolicibacterium moriokaense GAS496 [QJJU]
34082
34156
+
Arg
TCT
[ENA]
¡û
>W1810762996
QQAT01000027
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
65225
65149
-
Arg
TCT
[ENA]
¡û
>W10116542
ADNW01000021
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
147566
147642
+
Arg
TCT
[ENA]
¡û
>W1510649782
CVQP01000001
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
97184
97110
-
Arg
TCT
[ENA]
¡û
>W1510755055
CYSI01000007
Actinomycetota
Mycolicibacterium mucogenicum CSUR P2099 [CYSI]
1413683
1413757
+
Arg
TCT
[ENA]
¡û
>W11121224
ADNW02000014
Actinomycetota
Prescottella equi ATCC 33707 [ADNW]
89242
89166
-
Arg
TCT
[ENA]
¡û
>W1511511169
JXST01000002
Actinomycetota
Mycolicibacterium llatzerense CLUC14 [JXST]
189173
189099
-
Arg
TCT
[ENA]
¡û
>W1511533983
JYNL01000068
Actinomycetota
Mycolicibacterium chlorophenolicum DSM 43826 [JYNL]
61540
61614
+
Arg
TCT
[ENA]
¡û
>C121015984
FN563149
Actinomycetota
Prescottella equi 103S [FN563149]
3234643
3234719
+
Arg
TCT
[Ensembl]
¡û
>C161036276
CP011491
Actinomycetota
Mycolicibacterium vaccae 95051 [CP011491]
4035858
4035934
+
Arg
TCT
-
¡û
>C161089640
CP015596
Actinomycetota
Mycobacterium adipatum YC-RL4 [CP015596]
2480138
2480064
-
Arg
TCT
[Ensembl]
¡û
>W1610067966
BCQY01000009
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BCQY]
274393
274319
-
Arg
TCT
[ENA]
¡û
>W1610068590
BCRL01000032
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
96869
96945
+
Arg
TCT
[ENA]
¡û
>W1610068939
BCRS01000008
Actinomycetota
Mycolicibacterium vaccae NBRC 14118 = CIP 105934 [BCRS]
62066
62142
+
Arg
TCT
[ENA]
¡û
>W1610070132
BCTA01000002
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
271443
271369
-
Arg
TCT
[ENA]
¡û
>W1610082665
BDGK01000019
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
603941
604017
+
Arg
TCT
[ENA]
¡û
>W1610734981
LMMD01000009
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
58642
58716
+
Arg
TCT
[ENA]
¡û
>W1610742431
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
391468
391545
+
Arg
TCT
[ENA]
¡û
>W1610742567
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
573915
573839
-
Arg
TCT
[ENA]
¡û
>W1610854477
LQIH01000011
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
480
406
-
Arg
TCT
[ENA]
¡û
>W1610854521
LQII01000011
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
425
351
-
Arg
TCT
[ENA]
¡û
>W1610854568
LQIJ01000009
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
125618
125692
+
Arg
TCT
[ENA]
¡û
>W1610855199
LQIW01000049
Actinomycetota
Mycobacterium sp. IS-1590 [LQIW]
19961
19887
-
Arg
TCT
[ENA]
¡û
>W1610890846
LRQY01000037
Actinomycetota
Prescottella equi [LRQY]
226356
226432
+
Arg
TCT
[ENA]
¡û
>W1610890872
LRQZ01000011
Actinomycetota
Prescottella equi [LRQZ]
39859
39935
+
Arg
TCT
[ENA]
¡û
>W1610891148
LRRF01000039
Actinomycetota
Prescottella equi [LRRF]
55009
55085
+
Arg
TCT
[ENA]
¡û
>W1610919477
LSRE01000003
Actinomycetota
Tsukamurella pseudospumae [LSRE]
69252
69178
-
Arg
TCT
[ENA]
¡û
>W1610919545
LSRF01000044
Actinomycetota
Tsukamurella pseudospumae [LSRF]
121224
121150
-
Arg
TCT
[ENA]
¡û
>W1610919642
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
873319
873243
-
Arg
TCT
[ENA]
¡û
>W1610919703
LSRI01000024
Actinomycetota
Tsukamurella pulmonis [LSRI]
54533
54607
+
Arg
TCT
[ENA]
¡û
>W1611038766
LZKP01000082
Actinomycetota
Mycobacterium sp. E740 [LZKP]
19733
19659
-
Arg
TCT
[ENA]
¡û
>W1611062993
MBEF01000047
Actinomycetota
Mycolicibacterium vulneris [MBEF]
58028
58102
+
Arg
TCT
[ENA]
¡û
>W1710065339
BCQY01000009
Actinomycetota
Mycolicibacterium chlorophenolicum JCM 7439 = NBRC 15527 [BCQY]
274393
274319
-
Arg
TCT
[ENA]
¡û
>W1710065963
BCRL01000032
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [BCRL]
96869
96945
+
Arg
TCT
[ENA]
¡û
>W1710066312
BCRS01000008
Actinomycetota
Mycolicibacterium vaccae NBRC 14118 = CIP 105934 [BCRS]
62066
62142
+
Arg
TCT
[ENA]
¡û
>W1710067505
BCTA01000002
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
271443
271369
-
Arg
TCT
[ENA]
¡û
>W1710071977
BCXA01000017
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
121467
121541
+
Arg
TCT
[ENA]
¡û
>W1710072255
BCXF01000015
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
82623
82547
-
Arg
TCT
[ENA]
¡û
>W1710072291
BCXG01000008
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
85864
85790
-
Arg
TCT
[ENA]
¡û
>W1710081839
BDGK01000019
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
603941
604017
+
Arg
TCT
[ENA]
¡û
>W1710082990
BDIV01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDIV]
562792
562716
-
Arg
TCT
[ENA]
¡û
>W1710513356
FNAB01000010
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
81746
81820
+
Arg
TCT
[ENA]
¡û
>W1710517704
FNDN01000002
Actinomycetota
Rhodococcus triatomae [FNDN]
440098
440174
+
Arg
TCT
[ENA]
¡û
>W1710527708
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
1647570
1647646
+
Arg
TCT
[ENA]
¡û
>W1710533432
FNRC01000006
Actinomycetota
Mycobacterium sp. 283mftsu [FNRC]
214301
214227
-
Arg
TCT
[ENA]
¡û
>W1710544525
FOAW01000012
Actinomycetota
Rhodococcus maanshanensis [FOAW]
36892
36818
-
Arg
TCT
[ENA]
¡û
>W1710556279
FOKC01000002
Actinomycetota
Nocardioides alpinus [FOKC]
489921
489997
+
Arg
TCT
[ENA]
¡û
>W1710767054
LIPZ01000043
Actinomycetota
Mycolicibacterium llatzerense [LIPZ]
13049
12975
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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