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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200772 (16 seq.)
>WENV180095260
MTBK01059355
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
527
600
+
Gly
CCC
[ENA]
¡û
>WENV180095977
MTBK01100315
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1619
1544
-
Gly
CCC
[ENA]
¡û
>WENV170007962
AMWB02167831
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
918
842
-
Gly
CCC
[ENA]
¡û
>WENV170623497
FUWD013153913
[FUWD] metagenome; unknown
757
684
-
Gly
CCC
[ENA]
¡û
>WENV170631761
FUWD013364679
[FUWD] metagenome; unknown
757
684
-
Gly
CCC
[ENA]
¡û
>WENV170677027
LDZT01000367
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2640
2564
-
Gly
CCC
[ENA]
¡û
>WENV170678007
LDZT01010388
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1361
1287
-
Gly
CCC
[ENA]
¡û
>WENV170721813
LSQX01204131
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4326
4253
-
Gly
CCC
[ENA]
¡û
>WENV170978060
MTKZ01039627
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2280
2355
+
Gly
CCC
[ENA]
¡û
>SRA1016791
SRR035082.30321
454 Sequencing (SRP001803)
88
14
-
Gly
CCC
[SRA]
>SRA1026033
SRR035085.130909
454 Sequencing (SRP001806)
242
315
+
Gly
CCC
[SRA]
>SRA1035070
SRR035089.231387
454 Sequencing (SRP001810)
312
386
+
Gly
CCC
[SRA]
>SRA1049125
SRR035095.25288
454 Sequencing (SRP001816)
169
96
-
Gly
CCC
[SRA]
>SRA1049331
SRR035095.58101
454 Sequencing (SRP001816)
225
152
-
Gly
CCC
[SRA]
>W1610613992
LGGO01000156
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
1361
1287
-
Gly
CCC
[ENA]
¡û
>W1710735075
LGGO01000156
Unclassified
candidate division WS6 bacterium 34_10 [LGGO]
1361
1287
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK