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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20115 (121 seq.)
>W1711579443
MNRT01000002
Bacillota
Clostridium sp. 29_15 [MNRT]
9557
9647
+
Ser
GCT
[ENA]
¡û
>C171030608
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1877845
1877755
-
Ser
GCT
-
¡û
>C171131103
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
28611
28701
+
Ser
GCT
-
¡û
>W131195003
ASRV01000092
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
79582
79492
-
Ser
GCT
[ENA]
¡û
>WENV180098876
MTBK01272579
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1362
1272
-
Ser
GCT
[ENA]
¡û
>WENV180180640
OAWL01000132
[OAWL] human gut metagenome; faeces
16231
16141
-
Ser
GCT
[ENA]
¡û
>WENV180275825
OBHU01000411
[OBHU] human gut metagenome; feces
8060
8150
+
Ser
GCT
[ENA]
¡û
>WENV180337059
OBLG01011417
[OBLG] human gut metagenome; human gut
953
1043
+
Ser
GCT
[ENA]
¡û
>WENV180421950
OBVS01000020
[OBVS] human gut metagenome; faeces
5214
5304
+
Ser
GCT
[ENA]
¡û
>WENV180429189
OBWC01040851
[OBWC] human gut metagenome; faeces
1
91
+
Ser
GCT
[ENA]
¡û
>WENV180445112
OBXA01001552
[OBXA] human gut metagenome; faeces
5440
5350
-
Ser
GCT
[ENA]
¡û
>WENV180476899
OBYZ01000044
[OBYZ] human gut metagenome; faeces
8083
8173
+
Ser
GCT
[ENA]
¡û
>WENV180482637
OBZG01002689
[OBZG] human gut metagenome; faeces
910
1000
+
Ser
GCT
[ENA]
¡û
>WENV180489186
OBZR01030882
[OBZR] human gut metagenome; faeces
170
80
-
Ser
GCT
[ENA]
¡û
>W141063552
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
77812
77722
-
Ser
GCT
[ENA]
¡û
>W141063554
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
76524
76434
-
Ser
GCT
[ENA]
¡û
>WENV180760956
ODHZ01003175
[ODHZ] human metagenome; G_DNA_Stool
10817
10727
-
Ser
GCT
[ENA]
¡û
>WENV181463772
OGEO01036629
[OGEO] metagenome; Human gut stool
642
552
-
Ser
GCT
[ENA]
¡û
>WENV181676187
OGOP01042972
[OGOP] human gut metagenome; faeces
659
569
-
Ser
GCT
[ENA]
¡û
>WENV181699061
OGPF01008297
[OGPF] human gut metagenome; faeces
156
246
+
Ser
GCT
[ENA]
¡û
>WENV181707179
OGPL01009968
[OGPL] human gut metagenome; faeces
18
108
+
Ser
GCT
[ENA]
¡û
>WENV181800482
OGRY01036230
[OGRY] human gut metagenome; faeces
1233
1143
-
Ser
GCT
[ENA]
¡û
>WENV181805831
OGSJ01000690
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
16218
16128
-
Ser
GCT
[ENA]
¡û
>WENV181807869
OGSQ01000473
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
14225
14135
-
Ser
GCT
[ENA]
¡û
>WENV181809596
OGST01000592
[OGST] human gut metagenome; fecal sample 7 from infant 6
586
676
+
Ser
GCT
[ENA]
¡û
>WENV181814924
OGTH01002343
[OGTH] human gut metagenome; fecal sample 4 from infant 6
217
127
-
Ser
GCT
[ENA]
¡û
>WENV181826144
OGUL01006215
[OGUL] human gut metagenome; faeces
469
379
-
Ser
GCT
[ENA]
¡û
>WENV181834313
OGUR01000048
[OGUR] metagenome; Human gut stool
10833
10743
-
Ser
GCT
[ENA]
¡û
>WENV181876616
OGXC01044508
[OGXC] human gut metagenome; faeces
432
342
-
Ser
GCT
[ENA]
¡û
>WENV181981457
OHAG01002479
[OHAG] human gut metagenome; faeces
51
141
+
Ser
GCT
[ENA]
¡û
>WENV182405906
OIEX01000009
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
4940
5030
+
Ser
GCT
[ENA]
¡û
>WENV182816581
OJZB01000450
[OJZB] human gut metagenome; human gut
1936
2026
+
Ser
GCT
[ENA]
¡û
>WENV182838171
OKGO01001018
[OKGO] human gut metagenome; human gut
606
516
-
Ser
GCT
[ENA]
¡û
>WENV182844267
OKIR01000266
[OKIR] human gut metagenome; human gut
4269
4359
+
Ser
GCT
[ENA]
¡û
>WENV182862812
OKPP01005019
[OKPP] human gut metagenome; human gut
1286
1196
-
Ser
GCT
[ENA]
¡û
>WENV182863543
OKPT01002147
[OKPT] human gut metagenome; human gut
126
36
-
Ser
GCT
[ENA]
¡û
>WENV182874633
OKRW01018932
[OKRW] human gut metagenome; faeces
1047
957
-
Ser
GCT
[ENA]
¡û
>WENV182950262
OKVR01001441
[OKVR] human gut metagenome; human gut
1995
2085
+
Ser
GCT
[ENA]
¡û
>WENV182963282
OKWQ01000048
[OKWQ] human gut metagenome; stool
5197
5287
+
Ser
GCT
[ENA]
¡û
>WENV183113039
OLNP01004657
[OLNP] human gut metagenome; faeces
908
818
-
Ser
GCT
[ENA]
¡û
>WENV183114068
OLNP01101584
[OLNP] human gut metagenome; faeces
350
440
+
Ser
GCT
[ENA]
¡û
>WENV183132079
OLOB01000406
[OLOB] human gut metagenome; faeces
9649
9739
+
Ser
GCT
[ENA]
¡û
>WENV183146923
OLOM01036113
[OLOM] human gut metagenome; faeces
7
97
+
Ser
GCT
[ENA]
¡û
>WENV183148081
OLON01009987
[OLON] human gut metagenome; faeces
219
309
+
Ser
GCT
[ENA]
¡û
>WENV183187153
OLPO01007186
[OLPO] human gut metagenome; faeces
30
120
+
Ser
GCT
[ENA]
¡û
>WENV183261091
OLRP01007538
[OLRP] human gut metagenome; faeces
3169
3079
-
Ser
GCT
[ENA]
¡û
>WENV183296445
OLSL01054598
[OLSL] human gut metagenome; faeces
113
203
+
Ser
GCT
[ENA]
¡û
>WENV183327688
OLWA01001470
[OLWA] human gut metagenome; faeces
24220
24130
-
Ser
GCT
[ENA]
¡û
>WENV183519946
OMNT01003410
[OMNT] human gut metagenome; faeces
11506
11416
-
Ser
GCT
[ENA]
¡û
>WENV183596035
OODD01007728
[OODD] human gut metagenome; human gut
233
323
+
Ser
GCT
[ENA]
¡û
>WENV183751429
PPYE01012640
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1859
1769
-
Ser
GCT
[ENA]
¡û
>C181031724
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
28198
28288
+
Ser
GCT
-
¡û
>C181136090
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
18445
18535
+
Ser
GCT
-
¡û
>C191025593
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1769853
1769943
+
Ser
GCT
-
¡û
>W09118965
ACDK01000082
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
5119
5209
+
Ser
GCT
[ENA]
¡û
>W141820411
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1214562
1214652
+
Ser
GCT
[ENA]
¡û
>W1910498557
FXWX01000024
Bacillota
Khelaifiella massiliensis Mt13 [FXWX]
10296
10386
+
Ser
GCT
[ENA]
¡û
>W1911493932
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
225311
225221
-
Ser
GCT
[ENA]
¡û
>W1810604957
QGMU01000025
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
30182
30092
-
Ser
GCT
[ENA]
¡û
>W1810605029
QGMV01000017
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
5285
5375
+
Ser
GCT
[ENA]
¡û
>W2010161649
CABDWS010000119
Bacillota
Haloimpatiens lingqiaonensis P8956 [CABDWS]
4688
4598
-
Ser
GCT
[ENA]
¡û
>W2010210783
CABHIK010000010
Bacillota
Clostridium perfringens 4928STDY7387879 [CABHIK]
65873
65783
-
Ser
GCT
[ENA]
¡û
>W2010250248
CABIYB020000005
Bacillota
Clostridium baratii [CABIYB]
9870
9960
+
Ser
GCT
[ENA]
¡û
>W2011152386
OAOE01000031
Bacillota
Clostridium tertium [OAOE]
33244
33154
-
Ser
GCT
[ENA]
¡û
>W2011154883
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
225311
225221
-
Ser
GCT
[ENA]
¡û
>W2011687000
SRYR01000013
Bacillota
Clostridium sartagoforme NM50_B9-20 [SRYR]
5844
5934
+
Ser
GCT
[ENA]
¡û
>W2110075949
CACRTO010000015
Bacillota
Clostridium tertium [CACRTO]
37488
37398
-
Ser
GCT
[ENA]
¡û
>W2110245035
JACOOV010000013
Bacillota
Blautia sp. M16 [JACOOV]
9949
10039
+
Ser
GCT
[ENA]
¡û
>W2110261164
JACSQZ010000078
Bacillota
Clostridium sp. Sa3CUN1 [JACSQZ]
6672
6582
-
Ser
GCT
[ENA]
¡û
>W2110354254
JADNKB010000007
Bacillota
Clostridium sp. D46t1_190503_E9 [JADNKB]
212303
212213
-
Ser
GCT
[ENA]
¡û
>W2110367376
JADPEJ010000006
Bacillota
Clostridium tertium BSD2780120875b_170604_A12 [JADPEJ]
5364
5454
+
Ser
GCT
[ENA]
¡û
>W2110538251
JAGGJY010000004
Bacillota
Clostridium tertium DSM 2485 [JAGGJY]
216404
216314
-
Ser
GCT
[ENA]
¡û
>W2110672562
JAIFTO010000027
Bacillota
Clostridium chauvoei 12S0468 [JAIFTO]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110672817
JAIFTR010000028
Bacillota
Clostridium chauvoei BS92-02 [JAIFTR]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110672961
JAIFTT010000027
Bacillota
Clostridium chauvoei BS105-02 [JAIFTT]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110673037
JAIFTU010000027
Bacillota
Clostridium chauvoei BS106-02 [JAIFTU]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110673115
JAIFTV010000029
Bacillota
Clostridium chauvoei BS90-02 [JAIFTV]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110673278
JAIFTX010000027
Bacillota
Clostridium chauvoei S0260-09 [JAIFTX]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110673524
JAIFUA010000029
Bacillota
Clostridium chauvoei 12S0464 [JAIFUA]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110673607
JAIFUB010000027
Bacillota
Clostridium chauvoei 12S0465 [JAIFUB]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110673771
JAIFUD010000027
Bacillota
Clostridium chauvoei 12S0469 [JAIFUD]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110674016
JAIFUG010000027
Bacillota
Clostridium chauvoei 12S0472 [JAIFUG]
27342
27252
-
Ser
GCT
[ENA]
¡û
>W2110674425
JAIFUL010000028
Bacillota
Clostridium chauvoei BS80-01 [JAIFUL]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110674505
JAIFUM010000028
Bacillota
Clostridium chauvoei BS79-01 [JAIFUM]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110674670
JAIFUO010000028
Bacillota
Clostridium chauvoei 13S0854 [JAIFUO]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110674997
JAIFUS010000027
Bacillota
Clostridium chauvoei S0008-10 [JAIFUS]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110675079
JAIFUT010000027
Bacillota
Clostridium chauvoei S0040-08 [JAIFUT]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110675161
JAIFUU010000027
Bacillota
Clostridium chauvoei S0041-08 [JAIFUU]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110675242
JAIFUV010000029
Bacillota
Clostridium chauvoei 15S0088 [JAIFUV]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110675318
JAIFUW010000028
Bacillota
Clostridium chauvoei 15S0089 [JAIFUW]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110675484
JAIFUY010000029
Bacillota
Clostridium chauvoei 15S0008 [JAIFUY]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110675648
JAIFVA010000027
Bacillota
Clostridium chauvoei S0100-08 [JAIFVA]
27339
27249
-
Ser
GCT
[ENA]
¡û
>W2110675730
JAIFVB010000028
Bacillota
Clostridium chauvoei S0101-08 [JAIFVB]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110676051
JAIFVF010000026
Bacillota
Clostridium chauvoei S0015-08 [JAIFVF]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110676126
JAIFVG010000029
Bacillota
Clostridium chauvoei S0098-08 [JAIFVG]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110676453
JAIFVK010000026
Bacillota
Clostridium chauvoei BS171-00 [JAIFVK]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110676765
JAIFVO010000030
Bacillota
Clostridium chauvoei S0132-09 [JAIFVO]
19766
19676
-
Ser
GCT
[ENA]
¡û
>W2110676853
JAIFVP010000038
Bacillota
Clostridium chauvoei S0131-09 [JAIFVP]
13216
13126
-
Ser
GCT
[ENA]
¡û
>W2110677007
JAIFVR010000030
Bacillota
Clostridium chauvoei S0134-09 [JAIFVR]
27343
27253
-
Ser
GCT
[ENA]
¡û
>W2110677090
JAIFVS010000029
Bacillota
Clostridium chauvoei BC93-06 [JAIFVS]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110677172
JAIFVT010000027
Bacillota
Clostridium chauvoei BC97-06 [JAIFVT]
8418
8508
+
Ser
GCT
[ENA]
¡û
>W2110677340
JAIFVV010000026
Bacillota
Clostridium chauvoei BC138-06 [JAIFVV]
8418
8508
+
Ser
GCT
[ENA]
¡û
>C231418525
CP099799
Bacillota
Clostridium septicum RMA 8861 [CP099799]
42775
42865
+
Ser
GCT
-
¡û
>W2110770317
UFWF01000002
Bacillota
Clostridium baratii NCTC10986 [UFWF]
2766321
2766231
-
Ser
GCT
[ENA]
¡û
>W2110799632
WQPV01000008
Bacillota
Clostridium baratii MCC332 [WQPV]
180047
179957
-
Ser
GCT
[ENA]
¡û
>W2130021561
JADNAT010000008
Bacillota
Clostridium sp. 1001275B_160808_H3 [JADNAT]
160173
160083
-
Ser
GCT
[ENA]
¡û
>C241176581
CP059378
Bacillota
Clostridium intestinale Lx1 [CP059378]
25793
25883
+
Ser
GCT
-
¡û
>C241176583
CP059378
Bacillota
Clostridium intestinale Lx1 [CP059378]
27082
27172
+
Ser
GCT
-
¡û
>W1511551746
JZTY01000007
Bacillota
Clostridium baratii 771-14 [JZTY]
12232
12322
+
Ser
GCT
[ENA]
¡û
>W1511595466
LBMX01000047
Bacillota
Clostridium sp. C8 [LBMX]
5140
5230
+
Ser
GCT
[ENA]
¡û
>W1610501251
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
17632
17722
+
Ser
GCT
[ENA]
¡û
>W1610507771
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
354
264
-
Ser
GCT
[ENA]
¡û
>W1610616886
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178664
178574
-
Ser
GCT
[ENA]
¡û
>WENV086453
BABF01004643
Gut microbiome of Human (healthy human sample In-M, Infant, Female)
1
91
+
Ser
GCT
[ENA]
>W1710494721
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
17632
17722
+
Ser
GCT
[ENA]
¡û
>W1710499989
FLTT01000067
Bacillota
Clostridium septicum [FLTT]
354
264
-
Ser
GCT
[ENA]
¡û
>W1710587168
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
137458
137368
-
Ser
GCT
[ENA]
¡û
>W1710587170
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
136171
136081
-
Ser
GCT
[ENA]
¡û
>W1710588083
FQZB01000018
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
3628
3718
+
Ser
GCT
[ENA]
¡û
>W1710589432
FRAD01000030
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
10211
10121
-
Ser
GCT
[ENA]
¡û
>W1710742225
LGRR01000028
Bacillota
Clostridium baratii [LGRR]
178664
178574
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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