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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201159 (93 seq.)
>W1710879957
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
179
103
-
Met
CAT
[ENA]
¡û
>W1710996446
LQBL01000002
Actinomycetota
Serinicoccus chungangensis [LQBL]
189781
189707
-
Met
CAT
[ENA]
¡û
>W1711021458
LQZG01000004
Actinomycetota
Janibacter melonis [LQZG]
332831
332907
+
Met
CAT
[ENA]
¡û
>W1711187483
LWPN01000085
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
139
215
+
Met
CAT
[ENA]
¡û
>W1711391528
MELQ01000196
Actinomycetota
Actinobacteria bacterium RBG_16_68_12 [MELQ]
5127
5201
+
Met
CAT
[ENA]
¡û
>W1711491944
MKJZ01000022
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
309704
309630
-
Met
CAT
[ENA]
¡û
>W1711492042
MKKB01000333
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
101936
102012
+
Met
CAT
[ENA]
¡û
>W1711492244
MKKF01000049
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
166633
166707
+
Met
CAT
[ENA]
¡û
>W131002900
AGZR01000008
Actinomycetota
Propionimicrobium lymphophilum ACS-093-V-SCH5 [AGZR]
167503
167579
+
Met
CAT
[ENA]
¡û
>W131217018
ATWJ01000007
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
109345
109421
+
Met
CAT
[ENA]
¡û
>W131217165
ATWM01000005
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
192056
191982
-
Met
CAT
[ENA]
¡û
>W131230954
AUIB01000003
Actinomycetota
Propionimicrobium lymphophilum DSM 4903 [AUIB]
241601
241677
+
Met
CAT
[ENA]
¡û
>C171034668
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
3307739
3307813
+
Met
CAT
-
¡û
>WENV180019969
FTCS01003250
[FTCS] metagenome; soil
3752
3678
-
fMet
CAT
[ENA]
¢þ
>WENV180024353
FTIG01215854
[FTIG] metagenome; soil
75
-1
-
fMet
CAT
[ENA]
¢þ
>WENV180249356
OBEQ010189864
[OBEQ] groundwater metagenome; groundwater
1053
1128
+
fMet
CAT
[ENA]
¢þ
>WENV180258005
OBEQ010963427
[OBEQ] groundwater metagenome; groundwater
1960
1885
-
fMet
CAT
[ENA]
¢þ
>WENV180258283
OBEQ010992808
[OBEQ] groundwater metagenome; groundwater
219
293
+
fMet
CAT
[ENA]
¢þ
>WENV180259875
OBEQ011148597
[OBEQ] groundwater metagenome; groundwater
122280
122205
-
fMet
CAT
[ENA]
¢þ
>WENV180271224
OBEQ012248931
[OBEQ] groundwater metagenome; groundwater
4642
4567
-
fMet
CAT
[ENA]
¢þ
>WENV180291581
OBIV01090727
[OBIV] soil metagenome; Clay
232
157
-
fMet
CAT
[ENA]
¢þ
>WENV180309061
OBJR01480685
[OBJR] soil metagenome; soil
110
37
-
fMet
CAT
[ENA]
¢þ
>WENV180320492
OBKO01048449
[OBKO] soil metagenome; Alaskan Permafrost
115
189
+
fMet
CAT
[ENA]
¢þ
>WENV180321051
OBKQ01093450
[OBKQ] soil metagenome; Clay
202
128
-
fMet
CAT
[ENA]
¢þ
>WENV180327640
OBKT01336534
[OBKT] soil metagenome; soil
135
209
+
fMet
CAT
[ENA]
¢þ
>WENV180331467
OBLA01065304
[OBLA] soil metagenome; Alaskan Permafrost
87
163
+
fMet
CAT
[ENA]
¢þ
>WENV180342652
OBLJ01074296
[OBLJ] soil metagenome; Clay
327
254
-
fMet
CAT
[ENA]
¢þ
>WENV180344705
OBLL01126648
[OBLL] soil metagenome; soil
95
21
-
fMet
CAT
[ENA]
¢þ
>WENV180372430
OBOI01073314
[OBOI] sediment metagenome; sediment
38
112
+
fMet
CAT
[ENA]
¢þ
>W141039325
ALWX01000097
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
2884
2808
-
Met
CAT
[ENA]
¡û
>WENV180690263
OCZS010001494
[OCZS] soil metagenome; soil
1992
2067
+
fMet
CAT
[ENA]
¢þ
>WENV180691254
OCZS010086078
[OCZS] soil metagenome; soil
391
465
+
fMet
CAT
[ENA]
¢þ
>WENV180691778
OCZS010214439
[OCZS] soil metagenome; soil
599
673
+
fMet
CAT
[ENA]
¢þ
>WENV181155401
OEID01142157
[OEID] soil metagenome; soil
159
85
-
fMet
CAT
[ENA]
¢þ
>WENV181162430
OEIN01145944
[OEIN] soil metagenome; soil
77
151
+
fMet
CAT
[ENA]
¢þ
>WENV181163770
OEIQ01243671
[OEIQ] soil metagenome; soil
92
166
+
fMet
CAT
[ENA]
¢þ
>WENV181165454
OEIS01000801
[OEIS] soil metagenome; soil
1090
1016
-
fMet
CAT
[ENA]
¢þ
>WENV181192888
OEPS011165922
[OEPS] soil metagenome; soil
194
120
-
fMet
CAT
[ENA]
¢þ
>WENV181285760
OFGT01012440
[OFGT] soil metagenome; Clay
200
126
-
fMet
CAT
[ENA]
¢þ
>WENV181293804
OFHG01025779
[OFHG] soil metagenome; Clay
416
343
-
fMet
CAT
[ENA]
¢þ
>WENV181298318
OFHL01078047
[OFHL] soil metagenome; Clay
584
510
-
fMet
CAT
[ENA]
¢þ
>W141203573
AZIS01000003
Actinomycetota
Propionimicrobium sp. BV2F7 [AZIS]
136384
136308
-
Met
CAT
[ENA]
¡û
>WENV182645156
OJLY01003281
[OJLY] metagenome; surface
783
709
-
fMet
CAT
[ENA]
¢þ
>WENV182672060
OJNM01170916
[OJNM] metagenome; surface
333
407
+
fMet
CAT
[ENA]
¢þ
>WENV183672171
ORJL011143286
[ORJL] groundwater metagenome; groundwater
2164
2238
+
fMet
CAT
[ENA]
¢þ
>WENV183672307
ORJL011157199
[ORJL] groundwater metagenome; groundwater
33
106
+
fMet
CAT
[ENA]
¢þ
>WENV183672609
ORJL011190364
[ORJL] groundwater metagenome; groundwater
2899
2825
-
fMet
CAT
[ENA]
¢þ
>WENV183674977
ORJL011454953
[ORJL] groundwater metagenome; groundwater
2474
2399
-
fMet
CAT
[ENA]
¢þ
>WENV183674996
ORJL011457162
[ORJL] groundwater metagenome; groundwater
188
114
-
fMet
CAT
[ENA]
¢þ
>WENV183676546
ORJL011639071
[ORJL] groundwater metagenome; groundwater
335
409
+
fMet
CAT
[ENA]
¢þ
>WENV183679905
ORMF010120163
[ORMF] groundwater metagenome; groundwater
281
207
-
fMet
CAT
[ENA]
¢þ
>WENV183682979
ORMF010512780
[ORMF] groundwater metagenome; groundwater
6973
6899
-
fMet
CAT
[ENA]
¢þ
>WENV183691774
ORMF011816060
[ORMF] groundwater metagenome; groundwater
256
331
+
fMet
CAT
[ENA]
¢þ
>WENV183704231
PDWI01000102
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
121752
121676
-
fMet
CAT
[ENA]
¢þ
>WENV183721215
PDWJ01059475
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1783
1859
+
fMet
CAT
[ENA]
¢þ
>WENV183741202
PJUF01055878
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
281
207
-
fMet
CAT
[ENA]
¢þ
>WENV183749190
PPFU01133223
[PPFU] hypolithon metagenome; Antarctic Hypolithon
371
296
-
fMet
CAT
[ENA]
¢þ
>WENV170635013
JAHE01176910
[JAHE] sediment metagenome; lake sediment
312
239
-
Met
CAT
[ENA]
¢þ
>C181196300
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
2597413
2597337
-
Met
CAT
-
¡û
>C181197169
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
3791608
3791684
+
Met
CAT
-
¡û
>C191147725
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
2337995
2337919
-
Met
CAT
-
¡û
>C191183684
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
2348434
2348360
-
Met
CAT
-
¡û
>C191183900
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
919111
919187
+
Met
CAT
-
¡û
>W141727722
JNFL01000147
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
4671
4595
-
Met
CAT
[ENA]
¡û
>W141727756
JNFL01001286
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
90
166
+
Met
CAT
[ENA]
¡û
>W141727759
JNFL01001500
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
91
167
+
Met
CAT
[ENA]
¡û
>W09109309
ABUD01000008
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
54805
54881
+
Met
CAT
[ENA]
¡û
>W1911495850
OBQK01000005
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
188887
188813
-
Met
CAT
[ENA]
¡û
>W1911584654
PIPF01000012
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
41020
40944
-
Met
CAT
[ENA]
¡û
>W1911817441
QZMN01000012
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
124170
124244
+
Met
CAT
[ENA]
¡û
>W1810058275
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
3277847
3277923
+
Met
CAT
[ENA]
¡û
>W1810189351
PKIZ01000002
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
97017
96941
-
Met
CAT
[ENA]
¡û
>W1810784134
QQZY01000006
Actinomycetota
Gaiella occulta F2-233 [QQZY]
2034
1960
-
Met
CAT
[ENA]
¡û
>W1510071684
CDGT01000016
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
54002
54078
+
Met
CAT
[ENA]
¡û
>C10108070
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1979133
1979057
-
Met
CAT
[Ensembl]
¡û
>C11111433
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2845924
2845848
-
Met
CAT
[Ensembl]
¡û
>W11177017
AFYF01000058
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
31806
31732
-
Met
CAT
[ENA]
¡û
>W121124424
BAFE01000052
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
84682
84758
+
Met
CAT
[ENA]
¡û
>W1610051240
BBGR01000124
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
1543
1467
-
Met
CAT
[ENA]
¡û
>W1610068241
BCRE01000041
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
14534
14610
+
Met
CAT
[ENA]
¡û
>W1610069612
BCSQ01000012
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
410
334
-
Met
CAT
[ENA]
¡û
>W1610069675
BCSR01000023
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
15882
15958
+
Met
CAT
[ENA]
¡û
>W1610069700
BCSS01000005
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
57511
57587
+
Met
CAT
[ENA]
¡û
>W1610078148
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
903220
903144
-
Met
CAT
[ENA]
¡û
>W1610742303
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
179
103
-
Met
CAT
[ENA]
¡û
>W1610851103
LQBL01000002
Actinomycetota
Serinicoccus chungangensis [LQBL]
189781
189707
-
Met
CAT
[ENA]
¡û
>W1610869746
LQZG01000004
Actinomycetota
Janibacter melonis [LQZG]
332831
332907
+
Met
CAT
[ENA]
¡û
>W1710047639
BBGR01000124
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
1543
1467
-
Met
CAT
[ENA]
¡û
>W1710065614
BCRE01000041
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
14534
14610
+
Met
CAT
[ENA]
¡û
>W1710066985
BCSQ01000012
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
410
334
-
Met
CAT
[ENA]
¡û
>W1710067048
BCSR01000023
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
15882
15958
+
Met
CAT
[ENA]
¡û
>W1710067073
BCSS01000005
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
57511
57587
+
Met
CAT
[ENA]
¡û
>W1710076707
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
903220
903144
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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