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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201198 (28 seq.)
>WENV180080992
MPMC02073968
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
2281
2355
+
Thr
TGT
[ENA]
¡û
>WENV180387624
OBPF01023737
[OBPF] marine metagenome; Sterile flask
12
86
+
Thr
TGT
[ENA]
¡û
>WENV180591342
OCOV01013421
[OCOV] marine metagenome; ENVO:01000301
536
612
+
Thr
TGT
[ENA]
¡û
>WENV181838498
OGVN01001275
[OGVN] freshwater metagenome; freshwater
1247
1173
-
Thr
TGT
[ENA]
¡û
>WENV183622760
OOFW01006512
[OOFW] marine metagenome; sea ice
1453
1379
-
Thr
TGT
[ENA]
¡û
>WENV170125306
CENP01039766
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
110
184
+
Thr
TGT
[ENA]
¡û
>WENV170160253
CEOK01128337
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
245
171
-
Thr
TGT
[ENA]
¡û
>WENV170654464
JRYL01000003
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
312684
312758
+
Thr
TGT
[ENA]
¡û
>WENV170867473
MDTB01146989
[MDTB] marine metagenome; seawater
23782
23708
-
Thr
TGT
[ENA]
¡û
>W1910808931
MUGT01000035
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
23573
23499
-
Thr
TGT
[ENA]
¡û
>W1910935653
NIXN01000005
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
35407
35481
+
Thr
TGT
[ENA]
¡û
>W1910935658
NIXN01000005
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
53488
53562
+
Thr
TGT
[ENA]
¡û
>W1911564281
PCMW01000040
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
49584
49510
-
Thr
TGT
[ENA]
¡û
>W1911765455
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 Mar_2010_72 [QXCW]
2492542
2492468
-
Thr
TGT
[ENA]
¡û
>W2010713273
JACHTD010000006
Bacteroidota
Myroides sp. NP-2 [JACHTD]
82971
82897
-
Thr
TGT
[ENA]
¡û
>W2010713287
JACHTD010000008
Bacteroidota
Myroides sp. NP-2 [JACHTD]
110625
110699
+
Thr
TGT
[ENA]
¡û
>W2010713288
JACHTD010000008
Bacteroidota
Myroides sp. NP-2 [JACHTD]
110733
110807
+
Thr
TGT
[ENA]
¡û
>W2011323898
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 Mar_2010_72 [QXCW]
2492542
2492468
-
Thr
TGT
[ENA]
¡û
>W2012042750
VISN01000001
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_105 Mar_2010_105 [VISN]
1797850
1797924
+
Thr
TGT
[ENA]
¡û
>W2012426104
WRPN01000013
Bacteroidota
Mariniflexile sp. M5A1M [WRPN]
90412
90338
-
Thr
TGT
[ENA]
¡û
>W2110616969
JAHLEH010000012
Bacteroidota
Flavobacteriaceae bacterium XHP0103 [JAHLEH]
32784
32710
-
Thr
TGT
[ENA]
¡û
>C241048949
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
2320510
2320584
+
Thr
TGT
-
¡û
>C241048951
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
2320732
2320808
+
Thr
TGT
-
¡û
>C241048952
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
2320840
2320916
+
Thr
TGT
-
¡û
>C241048953
CP039934
Bacteroidota
Myroides fluvii CJ210 [CP039934]
2320948
2321022
+
Thr
TGT
-
¡û
>C241115332
CP047050
Bacteroidota
Myroides phaeus 18QD1AZ29W [CP047050]
247784
247710
-
Thr
TGT
-
¡û
>W2130004355
CAGKLC010000072
Bacteroidota
Flavobacterium sp. UGB4466 [CAGKLC]
4064
4138
+
Thr
TGT
[ENA]
¡û
>C121017000
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
912603
912677
+
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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