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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20140 (44 seq.)
>W131044847
AMQY01000014
Gammaproteobacteria
Halomonas jeotgali Hwa [AMQY]
403515
403425
-
Ser
TGA
[ENA]
¡û
>W1711339795
MCAP01000012
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
36552
36642
+
Ser
TGA
[ENA]
¡û
>W1711688826
MSDO01000003
Gammaproteobacteria
Salinicola socius [MSDO]
115847
115937
+
Ser
TGA
[ENA]
¡û
>W1712082137
NHOU01000026
Gammaproteobacteria
Salinicola salarius [NHOU]
35000
35090
+
Ser
TGA
[ENA]
¡û
>W131181448
AROI01000010
Gammaproteobacteria
Halopseudomonas pelagia CL-AP6 [AROI]
22830
22740
-
Ser
TGA
[ENA]
¡û
>W131225910
AUDZ01000005
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
335095
335005
-
Ser
TGA
[ENA]
¡û
>C006971
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
2185723
2185813
+
Ser
CGA
[Ensembl]
¡û
>WENV180356781
OBNL01025831
[OBNL] marine metagenome; ENVO:00002010
262
172
-
Ser
TGA
[ENA]
¡û
>WENV170176481
CEOS01082600
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
538
448
-
Ser
TGA
[ENA]
¡û
>WENV170472537
CEVG01204357
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
495
405
-
Ser
CGA
[ENA]
¡û
>WENV170672395
LAZR01000109
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
38186
38096
-
Ser
TGA
[ENA]
¡û
>WENV170672665
LAZR01000729
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1392
1302
-
Ser
TGA
[ENA]
¡û
>WENV170924363
MDTG01064896
[MDTG] marine metagenome; seawater
1
91
+
Ser
TGA
[ENA]
¡û
>WENV170933051
MDTG01214365
[MDTG] marine metagenome; seawater
96
6
-
Ser
TGA
[ENA]
¡û
>W09102553
AAHZ01000012
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
101261
101351
+
Ser
CGA
[ENA]
¡û
>W1911398029
NWMT01000221
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
63575
63485
-
Ser
TGA
[ENA]
¡û
>W1810426069
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
189083
189173
+
Ser
TGA
[ENA]
¡û
>W1810444178
PZJM01000004
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
448460
448550
+
Ser
TGA
[ENA]
¡û
>W1810444229
PZJN01000003
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
378876
378966
+
Ser
TGA
[ENA]
¡û
>W1810444471
PZJR01000003
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
364626
364536
-
Ser
TGA
[ENA]
¡û
>W1810444568
PZJS01000008
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
767487
767397
-
Ser
TGA
[ENA]
¡û
>W1810444598
PZJT01000006
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
110757
110667
-
Ser
TGA
[ENA]
¡û
>W1810444804
PZJW01000006
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
434123
434213
+
Ser
TGA
[ENA]
¡û
>W1810609431
QGTY01000005
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
59556
59466
-
Ser
CGA
[ENA]
¡û
>W2011134837
NWMT01000221
Gammaproteobacteria
Pseudomonas pelagia 58 [NWMT]
63575
63485
-
Ser
TGA
[ENA]
¡û
>W2011237712
QEQS01000005
Gammaproteobacteria
Chromohalobacter salexigens MP25462 [QEQS]
102640
102730
+
Ser
CGA
[ENA]
¡û
>W2011281400
QOVF01000001
Gammaproteobacteria
Pseudomonas sp. Y22 [QOVF]
1143338
1143428
+
Ser
TGA
[ENA]
¡û
>W2011451413
RKKU01000013
Gammaproteobacteria
Pseudomonas sp. SSM26 [RKKU]
108742
108832
+
Ser
TGA
[ENA]
¡û
>W2011451469
RKKV01000014
Gammaproteobacteria
Pseudomonas sp. SSM44 [RKKV]
533
443
-
Ser
TGA
[ENA]
¡û
>W2012141815
VTPX01000003
Gammaproteobacteria
Salinicola sp. L3 [VTPX]
291218
291128
-
Ser
TGA
[ENA]
¡û
>W2012141921
VTPZ01000001
Gammaproteobacteria
Pseudomonas profundi M5 [VTPZ]
116880
116790
-
Ser
TGA
[ENA]
¡û
>W2012144280
VTTI01000002
Gammaproteobacteria
Pseudomonas salina XCD-X85 [VTTI]
264190
264100
-
Ser
TGA
[ENA]
¡û
>W2012146555
VTVA01000014
Gammaproteobacteria
Pseudomonas sp. 16W4-4-3 [VTVA]
78378
78288
-
Ser
TGA
[ENA]
¡û
>W2110022351
BMFF01000004
Gammaproteobacteria
Pseudomonas salina CGMCC 1.12482 [BMFF]
177358
177448
+
Ser
TGA
[ENA]
¡û
>W2110240416
JACNMQ010000008
Gammaproteobacteria
Halomonas sp. M20 [JACNMQ]
114950
114860
-
Ser
TGA
[ENA]
¡û
>C201053403
CP033116
Gammaproteobacteria
Pseudomonas pelagia Kongs-67 [CP033116]
2666093
2666183
+
Ser
TGA
-
¡û
>C201216946
CP048629
Gammaproteobacteria
Pseudomonas sp. OIL-1 [CP048629]
3374381
3374291
-
Ser
TGA
-
¡û
>C241046695
CP038437
Gammaproteobacteria
Halomonas binhaiensis Y2R2 [CP038437]
2113235
2113325
+
Ser
TGA
-
¡û
>C241151304
CP051625
Gammaproteobacteria
Pseudomonas sp. gcc21 [CP051625]
1180710
1180620
-
Ser
TGA
-
¡û
>C241355314
CP140261
Gammaproteobacteria
Salinicola sp. LHM [CP140261]
2203576
2203666
+
Ser
TGA
-
¡û
>W1511334695
JQNW01000001
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
104283
104373
+
Ser
CGA
[ENA]
¡û
>C161051048
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
2203763
2203673
-
Ser
TGA
-
¡û
>W1710544843
FOBC01000001
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
61013
60923
-
Ser
TGA
[ENA]
¡û
>W1710577196
FPAQ01000014
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
50348
50438
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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