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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201621 (72 seq.)
>W1710879447
LMRR01000042
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
35394
35318
-
Leu
TAA
[ENA]
¡û
>W1711050076
LRRG01000052
Actinomycetota
Rhodococcus opacus [LRRG]
153497
153573
+
Leu
TAA
[ENA]
¡û
>W1711065069
LSBM01000035
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
56914
56840
-
Leu
TAA
[ENA]
¡û
>W1711075754
LSKR01002357
Actinomycetota
Corynebacterium durum [LSKR]
202
126
-
Leu
TAA
[ENA]
¡û
>W1711138398
LVCU01000063
Actinomycetota
Rhodococcus sp. EPR-147 [LVCU]
13527
13603
+
Leu
TAA
[ENA]
¡û
>W131239444
BANR01000010
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
112026
112102
+
Leu
TAA
[ENA]
¡û
>W141233951
BAWF01000095
Actinomycetota
Rhodococcus wratislaviensis NBRC 100605 [BAWF]
444549
444625
+
Leu
TAA
[ENA]
¡û
>WENV182642277
OJLL01019168
[OJLL] metagenome; surface
378
453
+
Leu
TAA
[ENA]
¡û
>WENV183511910
OMJG01012678
[OMJG] food metagenome; Cotija cheese
536
462
-
Leu
TAA
[ENA]
¡û
>WENV170975500
MTKZ01000941
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
278295
278371
+
Leu
TAA
[ENA]
¡û
>C181060852
CP022208
Actinomycetota
Rhodococcus pyridinivorans TG9 [CP022208]
1703290
1703364
+
Leu
TAA
-
¡û
>W1910183447
BJNT01000003
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
1273
1199
-
Leu
TAA
[ENA]
¡û
>W1911139505
NOXZ01000006
Actinomycetota
Rhodococcus sp. RS1C4 [NOXZ]
13276
13200
-
Leu
TAA
[ENA]
¡û
>W1911139742
NOYD01000061
Actinomycetota
Rhodococcus sp. 06-462-5 [NOYD]
163182
163106
-
Leu
TAA
[ENA]
¡û
>W1911139774
NOYE01000025
Actinomycetota
Rhodococcus sp. 06-418-5 [NOYE]
264912
264987
+
Leu
TAA
[ENA]
¡û
>W1911139812
NOYF01000015
Actinomycetota
Rhodococcus sp. 06-418-1B [NOYF]
145169
145095
-
Leu
TAA
[ENA]
¡û
>W1911140062
NOYK01000023
Actinomycetota
Rhodococcus sp. 06-156-4C [NOYK]
50453
50377
-
Leu
TAA
[ENA]
¡û
>W1911140158
NOYM01000011
Actinomycetota
Rhodococcus sp. 06-156-3C [NOYM]
50453
50377
-
Leu
TAA
[ENA]
¡û
>W1911140380
NOYQ01000009
Actinomycetota
Rhodococcus sp. 06-1477-1A [NOYQ]
146911
146836
-
Leu
TAA
[ENA]
¡û
>W1911140617
NOYV01000005
Actinomycetota
Rhodococcus sp. 05-340-1 [NOYV]
216055
216131
+
Leu
TAA
[ENA]
¡û
>W1911140675
NOYW01000014
Actinomycetota
Rhodococcus sp. 05-339-2 [NOYW]
184979
184905
-
Leu
TAA
[ENA]
¡û
>W1911140825
NOYZ01000025
Actinomycetota
Rhodococcus sp. 05-2256-B2 [NOYZ]
164669
164595
-
Leu
TAA
[ENA]
¡û
>W1911149043
NPFM01000002
Actinomycetota
Rhodococcus sp. 15-649-2-2 [NPFM]
186779
186705
-
Leu
TAA
[ENA]
¡û
>W1911149238
NPFQ01000006
Actinomycetota
Rhodococcus sp. 15-1189-1-1a [NPFQ]
9806
9731
-
Leu
TAA
[ENA]
¡û
>W1911149429
NPFU01000005
Actinomycetota
Rhodococcus fascians 14-2632c-1 [NPFU]
246651
246575
-
Leu
TAA
[ENA]
¡û
>SRA1015000
SRR023845.418172
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
42
-
Leu
TAA
[SRA]
>W2010097062
BJNT01000003
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
1273
1199
-
Leu
TAA
[ENA]
¡û
>W2010459038
JAAFYX010000001
Actinomycetota
Rhodococcus fascians GS6 [JAAFYX]
202868
202793
-
Leu
TAA
[ENA]
¡û
>W2010465094
JAAGLH010006724
Actinomycetota
Streptomyces sp. SID10244 [JAAGLH]
220
144
-
Leu
TAA
[ENA]
¡û
>W2010465780
JAAGLS010000065
Actinomycetota
Streptomyces sp. SID11726 [JAAGLS]
299213
299289
+
Leu
TAA
[ENA]
¡û
>W2010467037
JAAGMM010000005
Actinomycetota
Streptomyces sp. SID6673 [JAAGMM]
141594
141518
-
Leu
TAA
[ENA]
¡û
>W2010491298
JAAKDO010000002
Actinomycetota
Corynebacterium sp. MC1482 [JAAKDO]
207332
207258
-
Leu
TAA
[ENA]
¡û
>W2010580646
JAAXPF010000001
Actinomycetota
Corynebacterium mucifaciens ATCC 700355 [JAAXPF]
140982
141056
+
Leu
TAA
[ENA]
¡û
>W2010674324
JACCFE010000002
Actinomycetota
Rhodococcus wratislaviensis 4CII [JACCFE]
1486319
1486243
-
Leu
TAA
[ENA]
¡û
>W2011015005
NOXZ01000006
Actinomycetota
Rhodococcus sp. RS1C4 [NOXZ]
13276
13200
-
Leu
TAA
[ENA]
¡û
>W2011015242
NOYD01000061
Actinomycetota
Rhodococcus sp. 06-462-5 [NOYD]
163182
163106
-
Leu
TAA
[ENA]
¡û
>W2011015274
NOYE01000025
Actinomycetota
Rhodococcus sp. 06-418-5 [NOYE]
264912
264987
+
Leu
TAA
[ENA]
¡û
>W2011015312
NOYF01000015
Actinomycetota
Rhodococcus sp. 06-418-1B [NOYF]
145169
145095
-
Leu
TAA
[ENA]
¡û
>W2011015562
NOYK01000023
Actinomycetota
Rhodococcus sp. 06-156-4C [NOYK]
50453
50377
-
Leu
TAA
[ENA]
¡û
>W2011015658
NOYM01000011
Actinomycetota
Rhodococcus sp. 06-156-3C [NOYM]
50453
50377
-
Leu
TAA
[ENA]
¡û
>W2011015880
NOYQ01000009
Actinomycetota
Rhodococcus sp. 06-1477-1A [NOYQ]
146911
146836
-
Leu
TAA
[ENA]
¡û
>W2011016117
NOYV01000005
Actinomycetota
Rhodococcus sp. 05-340-1 [NOYV]
216055
216131
+
Leu
TAA
[ENA]
¡û
>W2011016175
NOYW01000014
Actinomycetota
Rhodococcus sp. 05-339-2 [NOYW]
184979
184905
-
Leu
TAA
[ENA]
¡û
>W2011016325
NOYZ01000025
Actinomycetota
Rhodococcus sp. 05-2256-B2 [NOYZ]
164669
164595
-
Leu
TAA
[ENA]
¡û
>W2011021962
NPFM01000002
Actinomycetota
Rhodococcus sp. 15-649-2-2 [NPFM]
186779
186705
-
Leu
TAA
[ENA]
¡û
>W2011022157
NPFQ01000006
Actinomycetota
Rhodococcus sp. 15-1189-1-1a [NPFQ]
9806
9731
-
Leu
TAA
[ENA]
¡û
>W2011022348
NPFU01000005
Actinomycetota
Rhodococcus fascians 14-2632c-1 [NPFU]
246651
246575
-
Leu
TAA
[ENA]
¡û
>W2011762643
UAUI01000003
Actinomycetota
Rhodococcus wratislaviensis NCTC13229 [UAUI]
6971
7047
+
Leu
TAA
[ENA]
¡û
>W2110182880
JABUCH010000041
Actinomycetota
Rhodococcus sp. BP-313 [JABUCH]
1301
1226
-
Leu
TAA
[ENA]
¡û
>W2110183023
JABUCK010000043
Actinomycetota
Rhodococcus sp. BP-277 [JABUCK]
20250
20325
+
Leu
TAA
[ENA]
¡û
>W2110183216
JABUCO010000041
Actinomycetota
Rhodococcus sp. BP-261 [JABUCO]
1301
1226
-
Leu
TAA
[ENA]
¡û
>W2110183424
JABUCT010000043
Actinomycetota
Rhodococcus sp. BP-256 [JABUCT]
20250
20325
+
Leu
TAA
[ENA]
¡û
>W2110183520
JABUCV010000046
Actinomycetota
Rhodococcus sp. BP-253 [JABUCV]
20250
20325
+
Leu
TAA
[ENA]
¡û
>W2110183616
JABUCX010000048
Actinomycetota
Rhodococcus sp. BP-251 [JABUCX]
20250
20325
+
Leu
TAA
[ENA]
¡û
>W2110183761
JABUDA010000049
Actinomycetota
Rhodococcus sp. BP-148 [JABUDA]
1301
1226
-
Leu
TAA
[ENA]
¡û
>W10124072
AEAU01000073
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
59635
59709
+
Leu
TAA
[ENA]
¡û
>C241214277
CP109162
Actinomycetota
Nocardia sp. NBC_01730 [CP109162]
4910754
4910680
-
Leu
TAA
-
¡û
>C241286048
CP128998
Actinomycetota
Rhodococcus opacus 3D [CP128998, CP128999]
6292698
6292774
+
Leu
TAA
-
¡û
>C11106682
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
2282711
2282637
-
Leu
TAA
[Ensembl]
¡û
>W1511186207
JMER01000005
Actinomycetota
Rhodococcus fascians GIC36 [JMER]
89198
89122
-
Leu
TAA
[ENA]
¡û
>W1511186793
JMFD01000020
Actinomycetota
Rhodococcus fascians 04-516 [JMFD]
252946
252870
-
Leu
TAA
[ENA]
¡û
>W11130909
AEAU01000073
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
59635
59709
+
Leu
TAA
[ENA]
¡û
>W11155966
AFAQ01001923
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
5535
5461
-
Leu
TAA
[ENA]
¡û
>C161084622
CP015220
Actinomycetota
Rhodococcus fascians PBTS 2 [CP015220]
2925106
2925182
+
Leu
TAA
[Ensembl]
¡û
>W121086884
AKKP01000107
Actinomycetota
Rhodococcus sp. JVH1 [AKKP]
150426
150502
+
Leu
TAA
[ENA]
¡û
>W1610163636
FAUH01000007
Actinomycetota
Corynebacterium variabile [FAUH]
101446
101520
+
Leu
TAA
[ENA]
¡û
>W1610741793
LMRR01000042
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
35394
35318
-
Leu
TAA
[ENA]
¡û
>W1610891205
LRRG01000052
Actinomycetota
Rhodococcus opacus [LRRG]
153497
153573
+
Leu
TAA
[ENA]
¡û
>W1610905858
LSBM01000035
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
56914
56840
-
Leu
TAA
[ENA]
¡û
>W1610949438
LVCU01000063
Actinomycetota
Rhodococcus sp. EPR-147 [LVCU]
13527
13603
+
Leu
TAA
[ENA]
¡û
>W1710046572
BBFO01001501
Actinomycetota
Rhodococcus opacus RKJ300 = JCM 13270 [BBFO]
764
688
-
Leu
TAA
[ENA]
¡û
>W1710165303
FAUH01000007
Actinomycetota
Corynebacterium variabile [FAUH]
101446
101520
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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