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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201770 (70 seq.)
>W1710862650
LMEO01000002
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
167568
167495
-
Pro
GGG
[ENA]
¡û
>W1710879910
LMRY01000060
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
261072
260999
-
Pro
GGG
[ENA]
¡û
>W1710880865
LMSP01000045
Bacillota
Paenibacillus sp. Soil787 [LMSP]
211576
211649
+
Pro
GGG
[ENA]
¡û
>W1711252432
LYPA01000022
Bacillota
Paenibacillus oryzae [LYPA]
42562
42637
+
Pro
GGG
[ENA]
¡û
>W1711252565
LYPB01000091
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
224907
224834
-
Pro
GGG
[ENA]
¡û
>W131229604
AUGY01000001
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
100011
100084
+
Pro
GGG
[ENA]
¡û
>W1711338631
MBTG01000003
Bacillota
Paenibacillus ferrarius [MBTG]
237206
237279
+
Pro
GGG
[ENA]
¡û
>W1711826982
MXQD01000015
Bacillota
Paenibacillus sp. MY03 [MXQD]
2832
2909
+
Pro
GGG
[ENA]
¡û
>W1711904503
MZNT01000005
Bacillota
Paenibacillus sp. 32352 [MZNT]
45347
45271
-
Pro
GGG
[ENA]
¡û
>W141251575
CBQR020000107
Bacillota
Gorillibacterium massiliense G5 [CBQR]
27156
27082
-
Pro
GGG
[ENA]
¡û
>WENV183734854
PJUA01000057
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
565
490
-
Pro
GGG
[ENA]
¡û
>WENV170705624
LNAP01000030
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
75350
75275
-
Pro
GGG
[ENA]
¡û
>WENV170705670
LNAP01000104
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
34176
34100
-
Pro
GGG
[ENA]
¡û
>W141564696
JIAZ01000006
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
331919
331992
+
Pro
GGG
[ENA]
¡û
>W141702768
JMLS01000004
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
188533
188457
-
Pro
GGG
[ENA]
¡û
>W1910018452
BDQX01000019
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
31032
30956
-
Pro
GGG
[ENA]
¡û
>W1910154590
BILW01000004
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
98921
98994
+
Pro
GGG
[ENA]
¡û
>W1910154760
BIMA01000055
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
6671
6594
-
Pro
GGG
[ENA]
¡û
>W1910155309
BIMM01000007
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
21624
21548
-
Pro
GGG
[ENA]
¡û
>W1910891873
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
2419996
2420072
+
Pro
GGG
[ENA]
¡û
>W1910913846
NHRJ02000002
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
510421
510345
-
Pro
GGG
[ENA]
¡û
>W1911071683
NMQW01000002
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
517050
516974
-
Pro
GGG
[ENA]
¡û
>W2010078348
BDQX01000019
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
31032
30956
-
Pro
GGG
[ENA]
¡û
>W2010087525
BILW01000004
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
98921
98994
+
Pro
GGG
[ENA]
¡û
>W2010087695
BIMA01000055
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
6671
6594
-
Pro
GGG
[ENA]
¡û
>W2010088244
BIMM01000007
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
21624
21548
-
Pro
GGG
[ENA]
¡û
>W2010473711
JAAIKC010000002
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
160582
160506
-
Pro
GGG
[ENA]
¡û
>W2010534751
JAAOZR010000006
Bacillota
Paenibacillus aceris KACC 19194 [JAAOZR]
364665
364738
+
Pro
GGG
[ENA]
¡û
>W2010610881
JABRUY010000004
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
295326
295399
+
Pro
GGG
[ENA]
¡û
>W2010682239
JACEID010000028
Bacillota
Paenibacillus sp. CGMCC 1.16610 [JACEID]
217317
217390
+
Pro
GGG
[ENA]
¡û
>W2010956743
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
2419996
2420072
+
Pro
GGG
[ENA]
¡û
>W2010966867
NHRJ02000002
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
510421
510345
-
Pro
GGG
[ENA]
¡û
>W2011001853
NMQW01000002
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
517050
516974
-
Pro
GGG
[ENA]
¡û
>W2011496254
RXHU01000018
Bacillota
Paenibacillus whitsoniae MER 54 [RXHU]
108527
108454
-
Pro
GGG
[ENA]
¡û
>W2011599679
SIRE01000006
Bacillota
Paenibacillus sp. N2SHLJ1 [SIRE]
84824
84749
-
Pro
GGG
[ENA]
¡û
>W2011617261
SKFG01000001
Bacillota
Paenibacillus sp. 18JY21-1 [SKFG]
576947
576872
-
Pro
GGG
[ENA]
¡û
>W2011973582
VCIW01000003
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
246315
246391
+
Pro
GGG
[ENA]
¡û
>W2011980433
VDCQ01000005
Bacillota
Paenibacillus hemerocallicola KCTC 33185 [VDCQ]
203710
203785
+
Pro
GGG
[ENA]
¡û
>W2012048515
VIWN01000001
Bacillota
Paenibacillus sp. 597 [VIWN]
751318
751245
-
Pro
GGG
[ENA]
¡û
>W2012098061
VNJI01000002
Bacillota
Paenibacillus sp. JC52 [VNJI]
134996
135072
+
Pro
GGG
[ENA]
¡û
>W2012328241
WHNZ01000012
Bacillota
Paenibacillus sp. LMG 31457 [WHNZ]
305045
304972
-
Pro
GGG
[ENA]
¡û
>W2012328356
WHOA01000089
Bacillota
Paenibacillus sp. LMG 31458 [WHOA]
75875
75802
-
Pro
GGG
[ENA]
¡û
>W2012328598
WHOD01000119
Bacillota
Paenibacillus sp. LMG 31456 [WHOD]
58592
58516
-
Pro
GGG
[ENA]
¡û
>W2012426831
WSEM01000015
Bacillota
Paenibacillus anseongense MAH-34 [WSEM]
217317
217390
+
Pro
GGG
[ENA]
¡û
>W2012437653
WTUZ01000021
Bacillota
Paenibacillus sp. 5J-6 [WTUZ]
297759
297832
+
Pro
GGG
[ENA]
¡û
>W2012450018
WUWM01000008
Bacillota
Paenibacillus sp. SJY2 [WUWM]
57455
57530
+
Pro
GGG
[ENA]
¡û
>W2110024818
BMHE01000021
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
57534
57607
+
Pro
GGG
[ENA]
¡û
>W2110130670
CAJVAS010000004
Bacillota
Paenibacillus solanacearum [CAJVAS]
232241
232165
-
Pro
GGG
[ENA]
¡û
>W2110275737
JACVVD010000003
Bacillota
Paenibacillus sp. WST5 [JACVVD]
438712
438636
-
Pro
GGG
[ENA]
¡û
>W2110300462
JADBDR010000015
Bacillota
Paenibacillus sp. OAS669 [JADBDR]
51829
51753
-
Pro
GGG
[ENA]
¡û
>W2110430865
JAEMXM010000002
Bacillota
Paenibacillus sp. YIM B00362 YIM B00362 [JAEMXM]
524781
524706
-
Pro
GGG
[ENA]
¡û
>W2110539124
JAGGKV010000002
Bacillota
Paenibacillus aceris DSM 24950 [JAGGKV]
332331
332258
-
Pro
GGG
[ENA]
¡û
>C211132210
CP060293
Bacillota
Paenibacillus sp. PAMC21692 [CP060293]
2098357
2098281
-
Pro
GGG
-
¡û
>C211340740
CP075889
Bacillota
Paenibacillus agaridevorans HCL2020 [CP075889]
8221453
8221377
-
Pro
GGG
-
¡û
>C231039385
CP031168
Bacillota
Paenibacillus sp. H1-7 [CP031168]
3265897
3265973
+
Pro
GGG
-
¡û
>C231287994
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
3270440
3270364
-
Pro
GGG
-
¡û
>C231491776
CP104467
Bacillota
Paenibacillus sp. SS4 [CP104467]
4584291
4584218
-
Pro
GGG
-
¡û
>C241101179
CP045802
Bacillota
Paenibacillus sp. B01 [CP045802]
2604763
2604839
+
Pro
GGG
-
¡û
>C241293364
CP130318
Bacillota
Paenibacillus aurantius MBLB1776 [CP130318]
3745107
3745031
-
Pro
GGG
-
¡û
>W1511433035
JUGY01000002
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
325839
325912
+
Pro
GGG
[ENA]
¡û
>W1610049655
BBFE01000006
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
58133
58208
+
Pro
GGG
[ENA]
¡û
>W1610724996
LMEO01000002
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
167568
167495
-
Pro
GGG
[ENA]
¡û
>W1610742256
LMRY01000060
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
261072
260999
-
Pro
GGG
[ENA]
¡û
>W1610743211
LMSP01000045
Bacillota
Paenibacillus sp. Soil787 [LMSP]
211576
211649
+
Pro
GGG
[ENA]
¡û
>W1611017220
LYPA01000022
Bacillota
Paenibacillus oryzae [LYPA]
42562
42637
+
Pro
GGG
[ENA]
¡û
>W1611017353
LYPB01000091
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
224907
224834
-
Pro
GGG
[ENA]
¡û
>W1710046054
BBFE01000006
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
58133
58208
+
Pro
GGG
[ENA]
¡û
>W1710523717
FNIF01000005
Bacillota
Paenibacillus sp. yr247 [FNIF]
229983
229910
-
Pro
GGG
[ENA]
¡û
>W1710567920
FOTE01000002
Bacillota
Paenibacillus sp. 1_12 [FOTE]
153708
153632
-
Pro
GGG
[ENA]
¡û
>W1710579729
FPIU01000002
Bacillota
Paenibacillus sp. UNCCL117 [FPIU]
513568
513493
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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