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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202066 (52 seq.)
>W1711117555
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
592598
592674
+
Met
CAT
[ENA]
¡û
>W1711117639
LUDI01000002
Bacteroidota
Riemerella anatipestifer [LUDI]
264046
263970
-
Met
CAT
[ENA]
¡û
>W1711117744
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
24837
24761
-
Met
CAT
[ENA]
¡û
>W1711117801
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
24715
24639
-
Met
CAT
[ENA]
¡û
>W1711117837
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
24715
24639
-
Met
CAT
[ENA]
¡û
>W1711117853
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
418098
418174
+
Met
CAT
[ENA]
¡û
>W1711117899
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
24813
24737
-
Met
CAT
[ENA]
¡û
>W1711117925
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
418099
418175
+
Met
CAT
[ENA]
¡û
>W1711117979
LUDR01000012
Bacteroidota
Riemerella anatipestifer [LUDR]
74781
74857
+
Met
CAT
[ENA]
¡û
>W1711118115
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
80438
80362
-
Met
CAT
[ENA]
¡û
>W1711385076
MEDR01000084
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
8283
8207
-
Met
CAT
[ENA]
¡û
>W1711504445
MKUO01000011
Bacteroidota
Bacteroidetes bacterium 43-93 [MKUO]
93171
93095
-
Met
CAT
[ENA]
¡û
>W1711505132
MKVE01000046
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
36844
36920
+
Met
CAT
[ENA]
¡û
>W1712050036
NFUW01000002
Bacteroidota
Chitinophagaceae bacterium IBVUCB1 [NFUW]
447166
447240
+
Met
CAT
[ENA]
¡û
>W131059192
ANGF01000001
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
260005
259929
-
Met
CAT
[ENA]
¡û
>C171015045
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
359000
359076
+
Met
CAT
-
¡û
>W141007767
AGYA01000003
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
37623
37547
-
Met
CAT
[ENA]
¡û
>WENV170013995
AVFP01001407
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
1807
1733
-
Met
CAT
[ENA]
¢þ
>WENV170654560
JRYL01000855
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
1073
997
-
Met
CAT
[ENA]
¢þ
>C181225796
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2148003
2148077
+
Met
CAT
-
¡û
>C181226347
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
628457
628531
+
Met
CAT
-
¡û
>C191065582
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
841688
841762
+
Met
CAT
-
¡û
>C191120492
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
644154
644228
+
Met
CAT
-
¡û
>C191120909
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
2128164
2128090
-
Met
CAT
-
¡û
>C191120925
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
707400
707474
+
Met
CAT
-
¡û
>C191181556
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
1604202
1604128
-
Met
CAT
-
¡û
>C191185712
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
700885
700959
+
Met
CAT
-
¡û
>W1911749791
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
42737
42663
-
Met
CAT
[ENA]
¡û
>W1911749810
QWIV01000006
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
84694
84768
+
Met
CAT
[ENA]
¡û
>SRA1001405
SRR001064.160453
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
43
118
+
Met
CAT
[SRA]
>W1810583126
QEWX01000045
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
6987
7061
+
Met
CAT
[ENA]
¡û
>W1810758154
QPIE01000002
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
378142
378216
+
Met
CAT
[ENA]
¡û
>C151010288
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1867161
1867085
-
Met
CAT
[Ensembl]
¡û
>C151018453
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
613943
614019
+
Met
CAT
-
¡û
>C11118439
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
626918
626994
+
Met
CAT
[Ensembl]
¡û
>C11118502
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1681241
1681165
-
Met
CAT
[Ensembl]
¡û
>W1511685305
LFNG01000011
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
65354
65430
+
Met
CAT
[ENA]
¡û
>C121012018
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
788437
788513
+
Met
CAT
-
¡û
>C131006688
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1469640
1469564
-
Met
CAT
[Ensembl]
¡û
>C131011631
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1102676
1102600
-
Met
CAT
[Ensembl]
¡û
>W1610928914
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
592598
592674
+
Met
CAT
[ENA]
¡û
>W1610928998
LUDI01000002
Bacteroidota
Riemerella anatipestifer [LUDI]
264046
263970
-
Met
CAT
[ENA]
¡û
>W1610929103
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
24837
24761
-
Met
CAT
[ENA]
¡û
>W1610929160
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
24715
24639
-
Met
CAT
[ENA]
¡û
>W1610929196
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
24715
24639
-
Met
CAT
[ENA]
¡û
>W1610929212
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
418098
418174
+
Met
CAT
[ENA]
¡û
>W1610929258
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
24813
24737
-
Met
CAT
[ENA]
¡û
>W1610929284
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
418099
418175
+
Met
CAT
[ENA]
¡û
>W1610929338
LUDR01000012
Bacteroidota
Riemerella anatipestifer [LUDR]
74781
74857
+
Met
CAT
[ENA]
¡û
>W1610929474
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
80438
80362
-
Met
CAT
[ENA]
¡û
>W1710587269
FQYI01000008
Bacteroidota
Cruoricaptor ignavus [FQYI]
65494
65570
+
Met
CAT
[ENA]
¡û
>W1710603343
FUYZ01000002
Bacteroidota
Soonwooa buanensis [FUYZ]
21640
21716
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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