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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202487 (80 seq.)
>W1710863251
LMEY01000027
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
127437
127361
-
Met
CAT
[ENA]
¡û
>W1710863351
LMFA01000026
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
35589
35513
-
Met
CAT
[ENA]
¡û
>W1710863375
LMFB01000019
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
444674
444750
+
Met
CAT
[ENA]
¡û
>W1710867386
LMIF01000029
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
134250
134174
-
Met
CAT
[ENA]
¡û
>W1710868531
LMJD01000027
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
289429
289505
+
Met
CAT
[ENA]
¡û
>W1710876378
LMPE01000005
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
132313
132389
+
Met
CAT
[ENA]
¡û
>W1710877482
LMQD01000007
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
6306
6230
-
Met
CAT
[ENA]
¡û
>W1710877598
LMQF01000065
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
35628
35552
-
Met
CAT
[ENA]
¡û
>W1710878189
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
330959
330883
-
Met
CAT
[ENA]
¡û
>W1710878438
LMQY01000037
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
96387
96463
+
Met
CAT
[ENA]
¡û
>W1710878798
LMRG01000004
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
124713
124637
-
Met
CAT
[ENA]
¡û
>W1711072952
LSIB01000136
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
296775
296851
+
Met
CAT
[ENA]
¡û
>W1711510439
MLAX01000003
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
69567
69491
-
Met
CAT
[ENA]
¡û
>W1711606274
MOOY01000005
Alphaproteobacteria
Pararhizobium arenae MIM27 [MOOY]
294680
294756
+
Met
CAT
[ENA]
¡û
>W131165036
ARBG01000190
Alphaproteobacteria
Rhizobium giardinii bv. giardinii H152 [ARBG]
57082
57006
-
Met
CAT
[ENA]
¡û
>W131230690
AUHV01000003
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
753994
753918
-
Met
CAT
[ENA]
¡û
>w018777
AATP01000007
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
39226
39304
+
Met
CAT
[ENA]
¡û
>C171057747
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5905002
5905078
+
Met
CAT
-
¡û
>WENV181227640
OFDN01024845
[OFDN] hot springs metagenome; Water
1138
1214
+
Met
CAT
[ENA]
¢þ
>WENV181323173
OFKW01018489
[OFKW] marine metagenome; sea ice
86
10
-
Met
CAT
[ENA]
¢þ
>WENV170002442
AGTN01030228
[AGTN] bioreactor metagenome; poplar biomass
211
287
+
Met
CAT
[ENA]
¢þ
>WENV170521651
CEWG01026440
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1135
1211
+
Met
CAT
[ENA]
¢þ
>WENV170577089
FRDC01003085
[FRDC] freshwater metagenome; water
36849
36925
+
Met
CAT
[ENA]
¢þ
>WENV170701569
LKGT01010901
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
4306
4230
-
Met
CAT
[ENA]
¢þ
>WENV170705017
LLEO01001551
[LLEO] bioreactor metagenome; day35 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
215
139
-
Met
CAT
[ENA]
¢þ
>WENV170705075
LLEP01000013
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
73026
73102
+
Met
CAT
[ENA]
¢þ
>WENV170772237
LXNI01017561
[LXNI] sponge metagenome; marine sponge reef
1064
1140
+
Met
CAT
[ENA]
¢þ
>WENV171003760
NNBV01000658
[NNBV] plant metagenome; symbiotic tissue sample KVS11
247934
248010
+
Met
CAT
[ENA]
¢þ
>C191014022
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
5317044
5316968
-
Met
CAT
-
¡û
>C191018793
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
898722
898798
+
Met
CAT
-
¡û
>C191188415
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
2519402
2519326
-
Met
CAT
-
¡û
>W141776101
JOKI01000009
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
92155
92079
-
Met
CAT
[ENA]
¡û
>W141805316
JPKG01000046
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
76273
76349
+
Met
CAT
[ENA]
¡û
>W141817636
JQKX01000013
Alphaproteobacteria
Thermopetrobacter sp. TC1 [JQKX]
60239
60315
+
Met
CAT
[ENA]
¡û
>W141821301
JQNM01000002
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
204468
204544
+
Met
CAT
[ENA]
¡û
>W1910547495
FZNU01000044
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
40239
40315
+
Met
CAT
[ENA]
¡û
>W1910840161
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
772789
772713
-
Met
CAT
[ENA]
¡û
>W1910847649
NBDP01000015
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
184212
184288
+
Met
CAT
[ENA]
¡û
>W1911148423
NPEV01000042
Alphaproteobacteria
Rhodobium orientis DSM 11290 [NPEV]
42857
42781
-
Met
CAT
[ENA]
¡û
>W1911551833
PCDP01000082
Alphaproteobacteria
Rhizobium tubonense CCBAU 85046 [PCDP]
47315
47239
-
Met
CAT
[ENA]
¡û
>W1911551867
PCDQ01000081
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
1533
1457
-
Met
CAT
[ENA]
¡û
>W1911788007
QYBB01000049
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
16335
16259
-
Met
CAT
[ENA]
¡û
>W1911788050
QYBC01000023
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
28403
28327
-
Met
CAT
[ENA]
¡û
>W1810110827
PHIG01000004
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
222318
222394
+
Met
CAT
[ENA]
¡û
>W1810608997
QGTR01000008
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
86147
86071
-
Met
CAT
[ENA]
¡û
>W1810671312
QJSR01000005
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 [QJSR]
262546
262470
-
Met
CAT
[ENA]
¡û
>W1810671350
QJSS01000005
Alphaproteobacteria
Rhizobium sp. PP-WC-1G-195 [QJSS]
250515
250439
-
Met
CAT
[ENA]
¡û
>W1810671488
QJSV01000008
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b [QJSV]
88432
88356
-
Met
CAT
[ENA]
¡û
>W1810672273
QJTH01000004
Alphaproteobacteria
Rhizobium sp. PP-F2F-G38 [QJTH]
123385
123461
+
Met
CAT
[ENA]
¡û
>W1810676896
QKMI01000005
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
274065
273989
-
Met
CAT
[ENA]
¡û
>W1810783315
QQTO01000021
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
309969
309893
-
Met
CAT
[ENA]
¡û
>W1810783345
QQTP01000005
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
135839
135915
+
Met
CAT
[ENA]
¡û
>W1511347488
JRJG01000062
Alphaproteobacteria
Hoeflea sp. BAL378 [JRJG]
5896
5969
+
Met
CAT
[ENA]
¡û
>W11135868
AEFL01000062
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
25169
25093
-
Met
CAT
[ENA]
¡û
>W1511564341
LADQ01000260
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
34220
34144
-
Met
CAT
[ENA]
¡û
>C161094058
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
877234
877158
-
Met
CAT
-
¡û
>W1610056810
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
346423
346499
+
Met
CAT
[ENA]
¡û
>W1610092239
CXWD01000039
Alphaproteobacteria
Roseibium alexandrii [CXWD]
2032
2108
+
Met
CAT
[ENA]
¡û
>W1610617171
LGSZ01000045
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
56392
56316
-
Met
CAT
[ENA]
¡û
>W1610725597
LMEY01000027
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
127437
127361
-
Met
CAT
[ENA]
¡û
>W1610725697
LMFA01000026
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
35589
35513
-
Met
CAT
[ENA]
¡û
>W1610725721
LMFB01000019
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
444674
444750
+
Met
CAT
[ENA]
¡û
>W1610729732
LMIF01000029
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
134250
134174
-
Met
CAT
[ENA]
¡û
>W1610730877
LMJD01000027
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
289429
289505
+
Met
CAT
[ENA]
¡û
>W1610738724
LMPE01000005
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
132313
132389
+
Met
CAT
[ENA]
¡û
>W1610739828
LMQD01000007
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
6306
6230
-
Met
CAT
[ENA]
¡û
>W1610739944
LMQF01000065
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
35628
35552
-
Met
CAT
[ENA]
¡û
>W1610740535
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
330959
330883
-
Met
CAT
[ENA]
¡û
>W1610740784
LMQY01000037
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
96387
96463
+
Met
CAT
[ENA]
¡û
>W1610741144
LMRG01000004
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
124713
124637
-
Met
CAT
[ENA]
¡û
>W1610912212
LSIB01000136
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
296775
296851
+
Met
CAT
[ENA]
¡û
>W1710015497
AQQS01000033
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
58078
58154
+
Met
CAT
[ENA]
¡û
>W1710053509
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
346423
346499
+
Met
CAT
[ENA]
¡û
>W1710064204
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
3549133
3549057
-
Met
CAT
[ENA]
¡û
>W1710095596
CXWD01000039
Alphaproteobacteria
Roseibium alexandrii [CXWD]
2032
2108
+
Met
CAT
[ENA]
¡û
>W1710538958
FNUY01000007
Alphaproteobacteria
Bosea lathyri [FNUY]
152442
152518
+
Met
CAT
[ENA]
¡û
>W1710544029
FOAN01000006
Alphaproteobacteria
Bosea lupini [FOAN]
97236
97312
+
Met
CAT
[ENA]
¡û
>W1710552210
FOGR01000005
Alphaproteobacteria
Rhizobium sp. NFR03 [FOGR]
287786
287710
-
Met
CAT
[ENA]
¡û
>W1710564905
FOQV01000002
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
497193
497269
+
Met
CAT
[ENA]
¡û
>W1710742785
LGSZ01000045
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
56392
56316
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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