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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202510 (23 seq.)
>W1710852992
LLWF02000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
39462
39535
+
Pro
TGG
[ENA]
¡û
>C171039543
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1860972
1861045
+
Pro
TGG
-
¡û
>C171074645
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1071173
1071246
+
Pro
TGG
-
¡û
>C171074697
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1067582
1067655
+
Pro
TGG
-
¡û
>C171074749
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1071425
1071498
+
Pro
TGG
-
¡û
>C171074801
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1062617
1062690
+
Pro
TGG
-
¡û
>W141276641
JADY01000008
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
158065
158138
+
Pro
TGG
[ENA]
¡û
>WENV183673821
ORJL011321505
[ORJL] groundwater metagenome; groundwater
1137
1213
+
Pro
TGG
[ENA]
¢þ
>WENV170004332
AGTN01642616
[AGTN] bioreactor metagenome; poplar biomass
215
141
-
Pro
TGG
[ENA]
¢þ
>WENV170019749
BBPE01000458
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
19355
19282
-
Pro
TGG
[ENA]
¢þ
>WENV170019894
BBPE01001225
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
195
122
-
Pro
TGG
[ENA]
¢þ
>WENV170577277
FRDC01004295
[FRDC] freshwater metagenome; water
658
731
+
Pro
TGG
[ENA]
¢þ
>C181102056
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
914167
914094
-
Pro
TGG
-
¡û
>W141558706
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
185206
185279
+
Pro
TGG
[ENA]
¡û
>W141779217
JONP01000018
Alphaproteobacteria
Roseomonas aerilata DSM 19363 [JONP]
12241
12168
-
Pro
TGG
[ENA]
¡û
>W1810605159
QGNA01000009
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
66233
66310
+
Pro
TGG
[ENA]
¡û
>W1810692317
QLIX01000002
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
543370
543297
-
Pro
TGG
[ENA]
¡û
>C151004013
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1096006
1096079
+
Pro
TGG
[Ensembl]
¡û
>C151004140
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2353281
2353208
-
Pro
TGG
[Ensembl]
¡û
>W121113827
ALOX01000010
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
70600
70527
-
Pro
TGG
[ENA]
¡û
>W1610716122
LLWF01000026
Alphaproteobacteria
Roseomonas mucosa [LLWF]
22116
22043
-
Pro
TGG
[ENA]
¡û
>W1710567302
FOSQ01000004
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
210786
210861
+
Pro
TGG
[ENA]
¡û
>W1710588279
FQZF01000006
Alphaproteobacteria
Roseomonas rosea [FQZF]
191914
191987
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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