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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20254 (37 seq.)
>W131218310
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
26165
26074
-
Ser
TGA
[ENA]
¡û
>WENV180013807
FPIC01000778
[FPIC] soil metagenome; Soil
27590
27681
+
Ser
TGA
[ENA]
¢þ
>WENV181285353
OFGS01000027
[OFGS] hot springs metagenome; Water and soil
32858
32949
+
Ser
TGA
[ENA]
¢þ
>WENV181408635
OGCH01007208
[OGCH] hot springs metagenome; hot springs
1864
1955
+
Ser
TGA
[ENA]
¢þ
>W09113797
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
212024
212115
+
Ser
TGA
[ENA]
¡û
>C09100852
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1625238
1625147
-
Ser
TGA
[Ensembl]
¡û
>W1911155357
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1805614
1805523
-
Ser
TGA
[ENA]
¡û
>W1911244049
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
963069
962978
-
Ser
TGA
[ENA]
¡û
>W1911244097
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1342556
1342465
-
Ser
TGA
[ENA]
¡û
>W1911244138
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1895521
1895430
-
Ser
TGA
[ENA]
¡û
>W1911244174
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1195621
1195712
+
Ser
TGA
[ENA]
¡û
>W1911244207
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
604575
604666
+
Ser
TGA
[ENA]
¡û
>W1911572537
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1133797
1133888
+
Ser
TGA
[ENA]
¡û
>W1911572591
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2601895
2601804
-
Ser
TGA
[ENA]
¡û
>W1911572632
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1236782
1236873
+
Ser
TGA
[ENA]
¡û
>W1810052242
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
690830
690921
+
Ser
TGA
[ENA]
¡û
>W1810071890
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1179889
1179980
+
Ser
TGA
[ENA]
¡û
>W1810071939
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2197635
2197726
+
Ser
TGA
[ENA]
¡û
>W1810071993
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2527954
2527863
-
Ser
TGA
[ENA]
¡û
>W1810368018
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2390993
2390902
-
Ser
TGA
[ENA]
¡û
>C11105207
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1228355
1228446
+
Ser
TGA
[Ensembl]
¡û
>C11105399
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1626961
1626870
-
Ser
TGA
[Ensembl]
¡û
>C11105432
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1346683
1346774
+
Ser
TGA
[Ensembl]
¡û
>C11105493
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1024067
1023976
-
Ser
TGA
[Ensembl]
¡û
>C11105874
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1402935
1402844
-
Ser
TGA
[Ensembl]
¡û
>W11139366
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
140073
139982
-
Ser
TGA
[ENA]
¡û
>W11139417
AEKC01000011
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
38825
38916
+
Ser
TGA
[ENA]
¡û
>W11139465
AEKD01000014
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
25546
25637
+
Ser
TGA
[ENA]
¡û
>W1511563967
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1793745
1793654
-
Ser
TGA
[ENA]
¡û
>W1710603740
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1678495
1678586
+
Ser
TGA
[ENA]
¡û
>W1710603838
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
778785
778694
-
Ser
TGA
[ENA]
¡û
>W1710603925
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1725621
1725530
-
Ser
TGA
[ENA]
¡û
>W1710605088
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
790744
790653
-
Ser
TGA
[ENA]
¡û
>W1710609662
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1597138
1597229
+
Ser
TGA
[ENA]
¡û
>W1710609700
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
998289
998380
+
Ser
TGA
[ENA]
¡û
>W1710609769
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1897176
1897085
-
Ser
TGA
[ENA]
¡û
>W1710609815
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1889718
1889627
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK