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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20255 (44 seq.)
>W131108960
APGP01000083
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
38525
38434
-
Ser
GCT
[ENA]
¡û
>W131218304
ATXO01000009
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
63298
63389
+
Ser
GCT
[ENA]
¡û
>C006894
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
861334
861425
+
Ser
GCT
[Ensembl]
¡û
>WENV180014089
FPIC01049986
[FPIC] soil metagenome; Soil
8474
8383
-
Ser
GCT
[ENA]
¢þ
>WENV181226164
OFDK01000134
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
130
221
+
Ser
GCT
[ENA]
¢þ
>WENV181226177
OFDK01000173
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9126
9035
-
Ser
GCT
[ENA]
¢þ
>WENV181285443
OFGS01000430
[OFGS] hot springs metagenome; Water and soil
1164
1255
+
Ser
GCT
[ENA]
¢þ
>W09104564
AALW01000089
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
946
1037
+
Ser
GCT
[ENA]
¡û
>C191131122
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2273241
2273150
-
Ser
GCT
-
¡û
>W09113825
ABYZ01000007
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
19720
19811
+
Ser
GCT
[ENA]
¡û
>C09100823
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
608767
608858
+
Ser
GCT
[Ensembl]
¡û
>W1911155326
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
788205
788296
+
Ser
GCT
[ENA]
¡û
>W1911244039
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2848443
2848534
+
Ser
GCT
[ENA]
¡û
>W1911244064
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
334376
334467
+
Ser
GCT
[ENA]
¡û
>W1911244114
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
887328
887419
+
Ser
GCT
[ENA]
¡û
>W1911244191
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
2214664
2214573
-
Ser
GCT
[ENA]
¡û
>W1911244245
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1622010
1621919
-
Ser
GCT
[ENA]
¡û
>W1911572554
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
2156076
2155985
-
Ser
GCT
[ENA]
¡û
>W1911572578
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1582915
1583006
+
Ser
GCT
[ENA]
¡û
>W1911572649
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2244953
2244862
-
Ser
GCT
[ENA]
¡û
>W1810052268
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1699014
1698923
-
Ser
GCT
[ENA]
¡û
>W1810071907
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
2198933
2198842
-
Ser
GCT
[ENA]
¡û
>W1810071963
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
312871
312780
-
Ser
GCT
[ENA]
¡û
>W1810071979
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1508957
1509048
+
Ser
GCT
[ENA]
¡û
>W1810367999
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1371955
1372046
+
Ser
GCT
[ENA]
¡û
>C10103626
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
571648
571739
+
Ser
GCT
[Ensembl]
¡û
>C11105222
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
2180943
2180852
-
Ser
GCT
[Ensembl]
¡û
>C11105378
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
594152
594243
+
Ser
GCT
[Ensembl]
¡û
>C11105447
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2289857
2289766
-
Ser
GCT
[Ensembl]
¡û
>C11105485
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1893914
1893823
-
Ser
GCT
[Ensembl]
¡û
>C11105845
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
456519
456610
+
Ser
GCT
[Ensembl]
¡û
>W11139399
AEKB01000019
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
19512
19603
+
Ser
GCT
[ENA]
¡û
>W11139439
AEKC01000046
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
11924
11833
-
Ser
GCT
[ENA]
¡û
>W11139488
AEKD01000057
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
1603
1694
+
Ser
GCT
[ENA]
¡û
>W1511563943
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
794910
795001
+
Ser
GCT
[ENA]
¡û
>W1511564073
LACO01000002
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
234297
234206
-
Ser
GCT
[ENA]
¡û
>W1710603755
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2695177
2695086
-
Ser
GCT
[ENA]
¡û
>W1710603816
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2683644
2683735
+
Ser
GCT
[ENA]
¡û
>W1710603894
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
708180
708271
+
Ser
GCT
[ENA]
¡û
>W1710605072
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
2691639
2691730
+
Ser
GCT
[ENA]
¡û
>W1710609677
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2613838
2613747
-
Ser
GCT
[ENA]
¡û
>W1710609725
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2006591
2006500
-
Ser
GCT
[ENA]
¡û
>W1710609746
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
880496
880587
+
Ser
GCT
[ENA]
¡û
>W1710609791
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
873240
873331
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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