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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20276 (74 seq.)
>W1711294075
LZZC01000043
Bacillota
Clostridium beijerinckii [LZZC]
3141
3231
+
Ser
GCT
[ENA]
¡û
>W1711294077
LZZC01000043
Bacillota
Clostridium beijerinckii [LZZC]
3583
3673
+
Ser
GCT
[ENA]
¡û
>W1711294113
LZZD01000017
Bacillota
Clostridium beijerinckii [LZZD]
80827
80737
-
Ser
GCT
[ENA]
¡û
>W1711294161
LZZE01000020
Bacillota
Clostridium beijerinckii [LZZE]
50
140
+
Ser
GCT
[ENA]
¡û
>W1711294237
LZZG01000022
Bacillota
Clostridium beijerinckii [LZZG]
72
162
+
Ser
GCT
[ENA]
¡û
>W1711294341
LZZI01000158
Bacillota
Clostridium beijerinckii [LZZI]
50
140
+
Ser
GCT
[ENA]
¡û
>W1711294482
LZZK01000078
Bacillota
Clostridium beijerinckii [LZZK]
3504
3594
+
Ser
GCT
[ENA]
¡û
>W1711294484
LZZK01000078
Bacillota
Clostridium beijerinckii [LZZK]
3948
4038
+
Ser
GCT
[ENA]
¡û
>W1711320435
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
3707
3797
+
Ser
GCT
[ENA]
¡û
>W1711320437
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
4151
4241
+
Ser
GCT
[ENA]
¡û
>W1711794369
MWMH01000014
Bacillota
Clostridium beijerinckii [MWMH]
117547
117457
-
Ser
GCT
[ENA]
¡û
>W1711794371
MWMH01000014
Bacillota
Clostridium beijerinckii [MWMH]
117103
117013
-
Ser
GCT
[ENA]
¡û
>W1711902896
MZGT01000087
Bacillota
Clostridium chromiireducens [MZGT]
3724
3814
+
Ser
GCT
[ENA]
¡û
>W1711902898
MZGT01000087
Bacillota
Clostridium chromiireducens [MZGT]
4139
4229
+
Ser
GCT
[ENA]
¡û
>W1712096560
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
122971
122881
-
Ser
GCT
[ENA]
¡û
>W1712096562
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
122528
122438
-
Ser
GCT
[ENA]
¡û
>C171045648
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
18249
18339
+
Ser
GCT
-
¡û
>C171045798
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
17515
17605
+
Ser
GCT
-
¡û
>C171045800
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
17959
18049
+
Ser
GCT
-
¡û
>C171045960
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
19568
19658
+
Ser
GCT
-
¡û
>C171045962
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
20303
20393
+
Ser
GCT
-
¡û
>W131092177
AOIF01000159
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
9037
8947
-
Ser
GCT
[ENA]
¡û
>W131156897
AQQG01000144
Bacillota
Clostridium diolis DSM 15410 [AQQG]
87655
87565
-
Ser
GCT
[ENA]
¡û
>W131156899
AQQG01000144
Bacillota
Clostridium diolis DSM 15410 [AQQG]
87213
87123
-
Ser
GCT
[ENA]
¡û
>C005034
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
17691
17781
+
Ser
GCT
[Ensembl]
¡û
>C005036
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
18134
18224
+
Ser
GCT
[Ensembl]
¡û
>w011463
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
119161
119069
-
Ser
GCT
[ENA]
¡û
>w011461
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
119604
119512
-
Ser
GCT
[ENA]
¡û
>WENV180232215
OBCO01000199
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180232694
OBCO01009058
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
92
2
-
Ser
GCT
[ENA]
¢þ
>WENV180233185
OBCP01000182
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180233658
OBCP01007509
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
92
2
-
Ser
GCT
[ENA]
¢þ
>WENV180569807
OCLR01000491
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
28732
28642
-
Ser
GCT
[ENA]
¢þ
>WENV180569809
OCLR01000491
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
28289
28199
-
Ser
GCT
[ENA]
¢þ
>WENV180570505
OCLS01000178
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180571519
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
3061
3151
+
Ser
GCT
[ENA]
¢þ
>WENV180571521
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
3504
3594
+
Ser
GCT
[ENA]
¢þ
>WENV180573804
OCLW01000187
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
2
92
+
Ser
GCT
[ENA]
¢þ
>WENV180574281
OCLW01012459
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
92
2
-
Ser
GCT
[ENA]
¢þ
>WENV180639822
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
124498
124408
-
Ser
GCT
[ENA]
¢þ
>WENV180639824
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
124055
123965
-
Ser
GCT
[ENA]
¢þ
>WENV180640750
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
3061
3151
+
Ser
GCT
[ENA]
¢þ
>WENV180640752
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
3504
3594
+
Ser
GCT
[ENA]
¢þ
>W141083132
AUPH01001603
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
3007
3097
+
Ser
GCT
[ENA]
¡û
>W141083134
AUPH01001603
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
3451
3541
+
Ser
GCT
[ENA]
¡û
>W141200323
AYXR01000086
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
10064
9974
-
Ser
GCT
[ENA]
¡û
>W141200325
AYXR01000086
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
9622
9532
-
Ser
GCT
[ENA]
¡û
>WENV170700016
LIDZ01000243
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
96
186
+
Ser
GCT
[ENA]
¢þ
>C181176701
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1007186
1007276
+
Ser
GCT
-
¡û
>C181203600
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
17656
17746
+
Ser
GCT
-
¡û
>C181203602
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
18100
18190
+
Ser
GCT
-
¡û
>W141560256
JHXK01000024
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
61628
61538
-
Ser
GCT
[ENA]
¡û
>W1911766233
QXDJ01000010
Bacillota
Clostridium chromiireducens C1 [QXDJ]
3547
3637
+
Ser
GCT
[ENA]
¡û
>W1911766235
QXDJ01000010
Bacillota
Clostridium chromiireducens C1 [QXDJ]
3962
4052
+
Ser
GCT
[ENA]
¡û
>W1810147478
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
124079
123989
-
Ser
GCT
[ENA]
¡û
>W1810147480
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
123637
123547
-
Ser
GCT
[ENA]
¡û
>W1810250466
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
123023
122933
-
Ser
GCT
[ENA]
¡û
>W1810250468
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
122579
122489
-
Ser
GCT
[ENA]
¡û
>W1810250470
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
122135
122045
-
Ser
GCT
[ENA]
¡û
>W1810271493
PRKY01000079
Bacillota
Clostridium diolis WST [PRKY]
12625
12535
-
Ser
GCT
[ENA]
¡û
>C151012317
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
17691
17781
+
Ser
GCT
[Ensembl]
¡û
>C151012319
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
18134
18224
+
Ser
GCT
[Ensembl]
¡û
>C151088313
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6169372
6169282
-
Ser
GCT
-
¡û
>C151088315
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6168930
6168840
-
Ser
GCT
-
¡û
>W11176259
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
269100
269190
+
Ser
GCT
[ENA]
¡û
>W11176261
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
269530
269620
+
Ser
GCT
[ENA]
¡û
>C161023422
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
3178
3268
+
Ser
GCT
[Ensembl]
¡û
>C161023424
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
3619
3709
+
Ser
GCT
[Ensembl]
¡û
>W121102357
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
124079
123989
-
Ser
GCT
[ENA]
¡û
>W121102359
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
123637
123547
-
Ser
GCT
[ENA]
¡û
>C131012895
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
17866
17956
+
Ser
GCT
[Ensembl]
¡û
>W1611062458
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
3707
3797
+
Ser
GCT
[ENA]
¡û
>W1611062460
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
4151
4241
+
Ser
GCT
[ENA]
¡û
>W1710578901
FPBY01000017
Bacillota
Clostridium sp. DSM 8431 [FPBY]
27786
27696
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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