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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202767 (50 seq.)
>W1710893942
LNFG01000055
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
38290
38366
+
His
GTG
[ENA]
¡û
>W1711709235
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3842771
3842695
-
His
GTG
[ENA]
¡û
>W1712104585
NIPV01000018
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
47362
47286
-
His
GTG
[ENA]
¡û
>W1712104653
NIPW01000058
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
28307
28383
+
His
GTG
[ENA]
¡û
>C171064539
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2488385
2488461
+
His
GTG
-
¡û
>C171067785
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2747164
2747088
-
His
GTG
-
¡û
>C171101148
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1884544
1884620
+
His
GTG
-
¡û
>C171105923
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
2847932
2847856
-
His
GTG
-
¡û
>WENV180040841
LLBZ010016904
[LLBZ] soil metagenome; soil from tomato rhizosphere
3280
3204
-
His
GTG
[ENA]
¡û
>W141055772
AOSK01000064
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
32974
32898
-
His
GTG
[ENA]
¡û
>WENV181167690
OEIU01059059
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
787
863
+
His
GTG
[ENA]
¡û
>WENV181168931
OEIV010000023
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17301
17225
-
His
GTG
[ENA]
¡û
>WENV181233605
OFET01000015
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1447
1523
+
His
GTG
[ENA]
¡û
>WENV181413929
OGCK01174345
[OGCK] hot springs metagenome; hot spring sediment
380
456
+
His
GTG
[ENA]
¡û
>W141277313
JAEM01000021
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
31428
31352
-
His
GTG
[ENA]
¡û
>WENV170681025
LFEF01044398
[LFEF] freshwater metagenome; waterbloom
578
502
-
His
GTG
[ENA]
¡û
>WENV170714044
LNFM01051845
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2567
2643
+
His
GTG
[ENA]
¡û
>C181081643
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
1157160
1157236
+
His
GTG
-
¡û
>W1910232026
FPEI01000006
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
479661
479585
-
His
GTG
[ENA]
¡û
>W1910808392
MUAV01000007
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
122790
122866
+
His
GTG
[ENA]
¡û
>W1911495004
OBMN01000001
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
116564
116640
+
His
GTG
[ENA]
¡û
>W1810195568
PKRQ01000005
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
73793
73717
-
His
GTG
[ENA]
¡û
>W1810351371
PVEP01000003
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
334924
335000
+
His
GTG
[ENA]
¡û
>W1810356742
PVND01000003
Alphaproteobacteria
Meinhardsimonia xiamenensis DSM 24422 [PVND]
410343
410267
-
His
GTG
[ENA]
¡û
>W1810486763
QAYC01000008
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
75741
75665
-
His
GTG
[ENA]
¡û
>W1810721620
QNSD01000003
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
29863
29939
+
His
GTG
[ENA]
¡û
>W1810750741
QOZU01000042
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
788
864
+
His
GTG
[ENA]
¡û
>W2010385569
FPEI01000006
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
479661
479585
-
His
GTG
[ENA]
¡û
>W2010439010
JAAATW010000001
Alphaproteobacteria
Rhodobacter sp. CCP-1 [JAAATW]
287928
287852
-
His
GTG
[ENA]
¡û
>W2010439046
JAAATX010000002
Alphaproteobacteria
Rhodobacteraceae bacterium HSP-20 [JAAATX]
245170
245246
+
His
GTG
[ENA]
¡û
>W2010497580
JAALFE010000007
Alphaproteobacteria
Rhodobacter sp. HX-7-19 [JAALFE]
54069
53993
-
His
GTG
[ENA]
¡û
>W2010913323
MUAV01000007
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
122790
122866
+
His
GTG
[ENA]
¡û
>W2011155908
OBMN01000001
Alphaproteobacteria
Rhodobacter vinaykumarii JA123 [OBMN]
116564
116640
+
His
GTG
[ENA]
¡û
>W2011429001
RIAQ01000027
Alphaproteobacteria
Paracoccus pantotrophus NJUST38 [RIAQ]
34157
34081
-
His
GTG
[ENA]
¡û
>W2011485960
RRYH01000018
Alphaproteobacteria
Rhodobacteraceae bacterium Pet-1 [RRYH]
6742
6666
-
His
GTG
[ENA]
¡û
>W2011589435
SIJH01000012
Alphaproteobacteria
Rhodobacter sp. YIM 73028 [SIJH]
88882
88806
-
His
GTG
[ENA]
¡û
>W2011620091
SLVM01000009
Alphaproteobacteria
Rhodovulum steppense DSM 21153 [SLVM]
27312
27388
+
His
GTG
[ENA]
¡û
>W2011658548
SOEB01000024
Alphaproteobacteria
Rhodovulum visakhapatnamense JA181 [SOEB]
54351
54275
-
His
GTG
[ENA]
¡û
>W2012088770
VMDU01000007
Alphaproteobacteria
Rhodobacter sp. SYSU G03088 [VMDU]
66923
66999
+
His
GTG
[ENA]
¡û
>W2012510298
WYDP01000001
Alphaproteobacteria
Rubellimicrobium sp. CFH 75288 [WYDP]
586110
586186
+
His
GTG
[ENA]
¡û
>W2110515887
JAFMSS010000002
Alphaproteobacteria
Rubellimicrobium sp. SYSU D00286 [JAFMSS]
410452
410376
-
His
GTG
[ENA]
¡û
>W2110515936
JAFMST010000002
Alphaproteobacteria
Rubellimicrobium sp. SYSU D00782 [JAFMST]
410452
410376
-
His
GTG
[ENA]
¡û
>W2110566646
JAGQDH010000004
Alphaproteobacteria
Roseovarius sp. SHN287 [JAGQDH]
32319
32243
-
His
GTG
[ENA]
¡û
>W2110641736
JAHSPE010000002
Alphaproteobacteria
Rhodobacter sp. HSP-20 [JAHSPE]
245170
245246
+
His
GTG
[ENA]
¡û
>C211259154
CP069370
Alphaproteobacteria
Rhodobacter sp. N10 [CP069370]
810967
811043
+
His
GTG
-
¡û
>C241091706
CP045073
Alphaproteobacteria
Paracoccus kondratievae BJQ0001 [CP045072, CP045073]
7183
7107
-
His
GTG
-
¡û
>C241253112
CP124535
Alphaproteobacteria
Fuscovulum ytuae YMD61 [CP124535]
291033
291109
+
His
GTG
-
¡û
>C11111806
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1944904
1944980
+
His
GTG
[Ensembl]
¡û
>C11111871
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2230599
2230675
+
His
GTG
[Ensembl]
¡û
>W1610754208
LNFG01000055
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
38290
38366
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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