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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202993 (4 seq.)
>WENV183670414
ORJL010942047
[ORJL] groundwater metagenome; groundwater
5314
5390
+
Arg
GCG
[ENA]
¡û
>WENV183685547
ORMF010862707
[ORMF] groundwater metagenome; groundwater
215
291
+
Arg
GCG
[ENA]
¡û
>W2110083348
CAINWJ010000052
Unclassified
Candidatus Peribacteria bacterium [CAINWJ]
2704
2780
+
Arg
GCG
[ENA]
¡û
>WENV069682
AACY023779312
Marine microbial communities from Global Ocean Sampling (GOS)
525
603
+
Arg
GCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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