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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.202999 (34 seq.)
>W1710877878
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
523854
523780
-
Arg
TCG
[ENA]
¡û
>W131227745
AUFK01000009
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
533727
533651
-
Arg
TCG
[ENA]
¡û
>W131229137
AUGO01000002
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
130436
130512
+
Arg
TCG
[ENA]
¡û
>WENV183727957
PJTP01009909
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
128
202
+
Arg
TCG
[ENA]
¡û
>WENV170274663
CERM01033408
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
125
-
Arg
TCG
[ENA]
¡û
>WENV170534995
CEWP01014801
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1735
1659
-
Arg
TCG
[ENA]
¡û
>WENV170782773
MAAC01011244
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
114412
114486
+
Arg
TCG
[ENA]
¡û
>WENV170816951
MDSX01040962
[MDSX] marine metagenome; seawater
1098
1022
-
Arg
TCG
[ENA]
¡û
>C191116117
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1077102
1077028
-
Arg
TCG
-
¡û
>C191116135
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
2129610
2129684
+
Arg
TCG
-
¡û
>W141806184
JPLY01000005
Bacteroidota
Epilithonimonas lactis [JPLY]
228275
228349
+
Arg
TCG
[ENA]
¡û
>W1910547669
FZNY01000007
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
205603
205529
-
Arg
TCG
[ENA]
¡û
>W1910698755
MEPA01000171
Bacteroidota
Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_31_6 [MEPA]
3088
3014
-
Arg
TCG
[ENA]
¡û
>W1810156100
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
169875
169801
-
Arg
TCG
[ENA]
¡û
>W2010429430
FZNY01000007
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
205603
205529
-
Arg
TCG
[ENA]
¡û
>W2010832181
MEPA01000171
Bacteroidota
Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_31_6 [MEPA]
3088
3014
-
Arg
TCG
[ENA]
¡û
>W2011532234
SBKO01000001
Bacteroidota
Flavobacterium sp. LLJ-11 [SBKO]
321258
321184
-
Arg
TCG
[ENA]
¡û
>W2011764563
UAVR01000011
Bacteroidota
Chryseobacterium balustinum NCTC11212 [UAVR]
312352
312278
-
Arg
TCG
[ENA]
¡û
>W2011818581
UFVS01000001
Bacteroidota
Chryseobacterium indoltheticum NCTC13560 [UFVS]
2796255
2796329
+
Arg
TCG
[ENA]
¡û
>W2012042691
VISL01000001
Bacteroidota
Dokdonia sp. Hel1_53 [VISL]
1264486
1264412
-
Arg
TCG
[ENA]
¡û
>W2012409079
WOWS01000003
Bacteroidota
Winogradskyella sp. HL2-2 [WOWS]
499843
499917
+
Arg
TCG
[ENA]
¡û
>W2110021572
BMEP01000004
Bacteroidota
Dokdonia pacifica CGMCC 1.12184 [BMEP]
264798
264872
+
Arg
TCG
[ENA]
¡û
>W2110217231
JACGWS010000001
Bacteroidota
Kordia aestuariivivens YSTF-M3 [JACGWS]
347976
348050
+
Arg
TCG
[ENA]
¡û
>W2110515434
JAFMPT010000001
Bacteroidota
Winogradskyella sp. E313 [JAFMPT]
290175
290249
+
Arg
TCG
[ENA]
¡û
>C211118197
CP058987
Bacteroidota
Olleya sp. HaHaR_3_96 [CP058987]
1349999
1350073
+
Arg
TCG
-
¡û
>C211239302
CP067432
Bacteroidota
Chryseobacterium indoltheticum POL15 [CP067432]
1206300
1206226
-
Arg
TCG
-
¡û
>C231235122
CP087131
Bacteroidota
Chryseobacterium turcicum C-17 [CP087131]
905280
905206
-
Arg
TCG
-
¡û
>C231571260
CP115918
Bacteroidota
Tenacibaculum ovolyticum 20-4135-2 [CP115918]
699669
699743
+
Arg
TCG
-
¡û
>W1511433234
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3416172
3416248
+
Arg
TCG
[ENA]
¡û
>W1610740224
LMQM01000010
Bacteroidota
Chryseobacterium sp. Leaf404 [LMQM]
523854
523780
-
Arg
TCG
[ENA]
¡û
>W1710550520
FOFI01000005
Bacteroidota
Epilithonimonas lactis [FOFI]
76132
76058
-
Arg
TCG
[ENA]
¡û
>W1710585888
FQWS01000001
Bacteroidota
Winogradskyella jejuensis [FQWS]
571565
571489
-
Arg
TCG
[ENA]
¡û
>W1710589866
FRAM01000001
Bacteroidota
Epilithonimonas mollis molle [FRAM]
17769
17695
-
Arg
TCG
[ENA]
¡û
>W1710603590
FUZE01000016
Bacteroidota
Chryseobacterium balustinum [FUZE]
81801
81727
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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