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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203131 (23 seq.)
>W1711078290
LSMS01000186
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
7129
7205
+
Arg
CCG
[ENA]
¡û
>W1711767474
MUZV01000010
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
163112
163188
+
Arg
CCG
[ENA]
¡û
>W1711947513
NBOD01000007
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
144457
144381
-
Arg
CCG
[ENA]
¡û
>WENV182540209
OJAF01000102
[OJAF] seawater metagenome; Sea water
567
643
+
Arg
CCG
[ENA]
¡û
>WENV182545179
OJBM01003997
[OJBM] seawater metagenome; Sea water
136
60
-
Arg
CCG
[ENA]
¡û
>WENV182550209
OJBZ01011803
[OJBZ] seawater metagenome; Sea water
746
822
+
Arg
CCG
[ENA]
¡û
>WENV182558838
OJDN01006052
[OJDN] seawater metagenome; Sea water
1974
1898
-
Arg
CCG
[ENA]
¡û
>WENV182559952
OJDR01000005
[OJDR] seawater metagenome; Sea water
22419
22343
-
Arg
CCG
[ENA]
¡û
>WENV182562303
OJDZ01000600
[OJDZ] seawater metagenome; Sea water
16241
16317
+
Arg
CCG
[ENA]
¡û
>WENV182567036
OJEN01000681
[OJEN] seawater metagenome; Sea water
10330
10254
-
Arg
CCG
[ENA]
¡û
>WENV182585065
OJHH01000674
[OJHH] seawater metagenome; Sea water
3785
3709
-
Arg
CCG
[ENA]
¡û
>WENV170780670
MAAB01012803
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
265
341
+
Arg
CCG
[ENA]
¡û
>WENV170781244
MAAB01030283
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
15
91
+
Arg
CCG
[ENA]
¡û
>WENV170957874
MKWU01000258
[MKWU] sponge metagenome;
41218
41294
+
Arg
CCG
[ENA]
¡û
>W1911585147
PIPR01000001
Gammaproteobacteria
Idiomarina aestuarii KYW314 [PIPR]
1626256
1626332
+
Arg
CCG
[ENA]
¡û
>W2010588300
JABBXH010000001
Gammaproteobacteria
Thalassotalea sp. M1531 [JABBXH]
689220
689296
+
Arg
CCG
[ENA]
¡û
>W2011194540
PIPR01000001
Gammaproteobacteria
Idiomarina aestuarii KYW314 [PIPR]
1626256
1626332
+
Arg
CCG
[ENA]
¡û
>W2110698205
JAIUHU010000010
Alphaproteobacteria
Mesorhizobium sp. Ca11 CA11 [JAIUHU]
90611
90535
-
Arg
CCG
[ENA]
¡û
>C231046431
CP040755
Gammaproteobacteria
Colwellia sp. M166 [CP040755]
2152216
2152292
+
Arg
CCG
-
¡û
>C231084364
CP059733
Gammaproteobacteria
Thalassomonas viridans XOM25 [CP059733, CP059734]
6264221
6264297
+
Arg
CCG
-
¡û
>C231084536
CP059735
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [CP059735, CP059736]
404451
404375
-
Arg
CCG
-
¡û
>W2310028660
BSST01000001
Gammaproteobacteria
Thalassotalea insulae KCTC 62186 [BSST]
1727916
1727992
+
Arg
CCG
[ENA]
¡û
>W1610917306
LSMS01000186
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
7129
7205
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK