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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203133 (14 seq.)
>C015244
CP000127
Gammaproteobacteria
Nitrosococcus oceani ATCC 19707 [CP000127]
3429133
3429057
-
Pro
CGG
[Ensembl]
¡û
>w014152
AAOF01000015
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
73771
73847
+
Pro
CGG
[ENA]
¡û
>W08011096
ABSG01000029
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
70817
70744
-
Pro
CGG
[ENA]
¡û
>WENV170652331
JRYH01000938
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
32937
32861
-
Pro
CGG
[ENA]
¡û
>WENV170771168
LXNI01000545
[LXNI] sponge metagenome; marine sponge reef
15047
14971
-
Pro
CGG
[ENA]
¡û
>WENV170773577
LXNJ01008504
[LXNJ] sponge metagenome; marine sponge reef
2531
2607
+
Pro
CGG
[ENA]
¡û
>WENV170957893
MKWU01000277
[MKWU] sponge metagenome;
70109
70033
-
Pro
CGG
[ENA]
¡û
>W141802341
JPFN01000130
Gammaproteobacteria
Nitrosococcus oceani [JPFN]
28056
27980
-
Pro
CGG
[ENA]
¡û
>W141803336
JPGN01000088
Gammaproteobacteria
Nitrosococcus oceani C-27 [JPGN]
7072
6996
-
Pro
CGG
[ENA]
¡û
>W1810898064
QUZK01000042
Gammaproteobacteria
Wenzhouxiangella sediminis XDB06 [QUZK]
96696
96620
-
Pro
CGG
[ENA]
¡û
>W2010102466
BJWX01000019
Gammaproteobacteria
Nitrosococcus oceani NS58 [BJWX]
62082
62158
+
Pro
CGG
[ENA]
¡û
>W2010488737
JAAIVI010000020
Gammaproteobacteria
Wenzhouxiangella sp. XN201 [JAAIVI]
408291
408215
-
Pro
CGG
[ENA]
¡û
>W2110655059
JAHVKF010000003
Gammaproteobacteria
Halomonas denitrificans DP3N28-8 [JAHVKF]
352693
352617
-
Pro
CGG
[ENA]
¡û
>C10109930
CP002086
Gammaproteobacteria
Nitrosococcus watsonii C-113 [CP002086]
3275413
3275337
-
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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