This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203148 (55 seq.)
>W1711066851
LSDG01000023
Bacillota
Peptoniphilus coxii [LSDG]
176189
176113
-
Met
CAT
[ENA]
¡û
>WENV180172605
OAVX01009652
[OAVX] human gut metagenome; faeces
330
406
+
Ile2
CAT
[ENA]
¢þ
>WENV180172643
OAVX01012628
[OAVX] human gut metagenome; faeces
178
102
-
Ile2
CAT
[ENA]
¢þ
>WENV180537378
OCHO01000023
[OCHO] human gut metagenome; human gut
30829
30905
+
Ile2
CAT
[ENA]
¢þ
>WENV180556151
OCJQ01003378
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
426
350
-
Ile2
CAT
[ENA]
¢þ
>WENV181436651
OGDF01024831
[OGDF] human gut metagenome; human gut
853
929
+
Ile2
CAT
[ENA]
¢þ
>WENV181437080
OGDF01053178
[OGDF] human gut metagenome; human gut
1150
1074
-
Ile2
CAT
[ENA]
¢þ
>W141147536
AWXB01000004
Bacillota
Peptoniphilus sp. BV3C26 [AWXB]
7084
7160
+
Met
CAT
[ENA]
¡û
>WENV181607938
OGLM01037822
[OGLM] metagenome; Human gut stool
1387
1313
-
Ile2
CAT
[ENA]
¢þ
>WENV181665240
OGOJ01000511
[OGOJ] human gut metagenome; faeces
9981
10057
+
Ile2
CAT
[ENA]
¢þ
>WENV181698338
OGPE01032599
[OGPE] human gut metagenome; faeces
7
83
+
Ile2
CAT
[ENA]
¢þ
>WENV181800913
OGRZ01000135
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
29874
29798
-
Ile2
CAT
[ENA]
¢þ
>WENV181806424
OGSK01005428
[OGSK] human gut metagenome; fecal sample 2 from infant 5
799
723
-
Ile2
CAT
[ENA]
¢þ
>WENV181806582
OGSL01000145
[OGSL] human gut metagenome; fecal sample 6 from infant 5
635
711
+
Ile2
CAT
[ENA]
¢þ
>WENV181810266
OGSU01012252
[OGSU] human gut metagenome; fecal sample 7 from infant 5
392
316
-
Ile2
CAT
[ENA]
¢þ
>WENV181815496
OGTK01000151
[OGTK] human gut metagenome; fecal sample 2 from infant 2
29874
29798
-
Ile2
CAT
[ENA]
¢þ
>WENV182300682
OHWM01033654
[OHWM] human gut metagenome; feces
85
161
+
Ile2
CAT
[ENA]
¢þ
>WENV182407568
OIFD01000111
[OIFD] human gut metagenome; stool
55422
55346
-
Ile2
CAT
[ENA]
¢þ
>WENV182641071
OJLE01003877
[OJLE] metagenome; surface
1476
1552
+
Ile2
CAT
[ENA]
¢þ
>WENV182644093
OJLW01007420
[OJLW] metagenome; surface
1594
1670
+
Ile2
CAT
[ENA]
¢þ
>WENV182644341
OJLW01024626
[OJLW] metagenome; surface
329
405
+
Ile2
CAT
[ENA]
¢þ
>WENV182756840
OJRG01011702
[OJRG] human gut metagenome; stool sample
1408
1484
+
Ile2
CAT
[ENA]
¢þ
>WENV182825586
OKCK01000797
[OKCK] human gut metagenome; human gut
1928
2004
+
Ile2
CAT
[ENA]
¢þ
>WENV182837592
OKGJ01000710
[OKGJ] human gut metagenome; human gut
2268
2344
+
Ile2
CAT
[ENA]
¢þ
>WENV182854243
OKMQ01004726
[OKMQ] human gut metagenome; human gut
402
326
-
Ile2
CAT
[ENA]
¢þ
>WENV183081112
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1096
1020
-
Ile2
CAT
[ENA]
¢þ
>WENV183158144
OLOT01017768
[OLOT] human gut metagenome; faeces
31
107
+
Ile2
CAT
[ENA]
¢þ
>WENV183185542
OLPN01012938
[OLPN] human gut metagenome; faeces
2694
2618
-
Ile2
CAT
[ENA]
¢þ
>WENV183248345
OLRF01064918
[OLRF] human gut metagenome; faeces
722
646
-
Ile2
CAT
[ENA]
¢þ
>WENV183768658
PPYE01393785
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
993
1069
+
Ile2
CAT
[ENA]
¢þ
>WENV170636861
JFBN01307035
[JFBN] chicken gut metagenome; ceca of Broiler chicken
763
687
-
Met
CAT
[ENA]
¢þ
>WENV170644305
JMBW01005171
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1318
1394
+
Met
CAT
[ENA]
¢þ
>W09124209
ACHM01000020
Bacillota
Finegoldia magna ATCC 53516 [ACHM]
270005
269929
-
Met
CAT
[ENA]
¡û
>W1910341063
FTPC01000001
Bacillota
Peptoniphilus urinae Marseille-P3195 [FTPC]
186369
186293
-
Met
CAT
[ENA]
¡û
>W1910373599
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1363
1439
+
Met
CAT
[ENA]
¡û
>W1910373603
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1803
1879
+
Met
CAT
[ENA]
¡û
>W1910874121
NDYC01000017
Bacillota
Finegoldia magna CCUG 54800 [NDYC]
1304
1380
+
Met
CAT
[ENA]
¡û
>W1910874320
NDYH01000016
Bacillota
Finegoldia magna 09T408 [NDYH]
706
782
+
Met
CAT
[ENA]
¡û
>W1911498332
OCTQ01000001
Bacillota
Miniphocaeibacter massiliensis Marseille-P4678 [OCTQ]
497401
497325
-
Met
CAT
[ENA]
¡û
>W1911541777
OPYI01000001
Bacillota
Peptoniphilus coli Marseille-P3761 [OPYI]
1098
1174
+
Met
CAT
[ENA]
¡û
>W1810608402
QGTH01000015
Bacillota
Finegoldia magna DSM 20470 [QGTH]
55729
55653
-
Met
CAT
[ENA]
¡û
>C11109016
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
759668
759592
-
Met
CAT
[Ensembl]
¡û
>W11144132
AEQN01000007
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
150628
150704
+
Met
CAT
[ENA]
¡û
>W11174032
AFUI01000011
Bacillota
Finegoldia magna SY403409CC001050417 [AFUI]
80295
80219
-
Met
CAT
[ENA]
¡û
>C131003080
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1009344
1009420
+
Met
CAT
[Ensembl]
¡û
>C131003084
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1009780
1009856
+
Met
CAT
[Ensembl]
¡û
>C131003096
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1010996
1011072
+
Met
CAT
[Ensembl]
¡û
>C131003099
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1011334
1011410
+
Met
CAT
[Ensembl]
¡û
>W1610506397
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
184802
184726
-
Met
CAT
[ENA]
¡û
>W1610605794
LFSH01000020
Bacillota
Clostridiales bacterium DTU070 [LFSH]
25360
25284
-
Met
CAT
[ENA]
¡û
>W1610907421
LSDG01000023
Bacillota
Peptoniphilus coxii [LSDG]
176189
176113
-
Met
CAT
[ENA]
¡û
>W1710498900
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
184802
184726
-
Met
CAT
[ENA]
¡û
>W1710582499
FQTY01000026
Bacillota
Tissierella praeacuta DSM 18095 [FQTY]
1050
1126
+
Met
CAT
[ENA]
¡û
>W1710602808
FUYN01000019
Bacillota
Acetoanaerobium noterae [FUYN]
716
792
+
Met
CAT
[ENA]
¡û
>W1710727081
LFSH01000020
Bacillota
Clostridiales bacterium DTU070 [LFSH]
25360
25284
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK