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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203391 (100 seq.)
>W1710806376
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
1645832
1645908
+
Ile
GAT
[ENA]
¡û
>W1710806407
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
4819606
4819682
+
Ile
GAT
[ENA]
¡û
>W1710806417
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
730334
730258
-
Ile
GAT
[ENA]
¡û
>W1710806435
LKAX01000011
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
964003
963927
-
Ile
GAT
[ENA]
¡û
>W1710813386
LKJO01000038
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
1729
1805
+
Ile
GAT
[ENA]
¡û
>W1710813393
LKJO01000068
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
124
200
+
Ile
GAT
[ENA]
¡û
>W1710815777
LKKN01000129
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
1729
1805
+
Ile
GAT
[ENA]
¡û
>W1711124935
LUKQ02000722
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
195
271
+
Ile
GAT
[ENA]
¡û
>W1712108225
NJBA01000183
Gammaproteobacteria
Pseudomonas nitroreducens [NJBA]
150
226
+
Ile
GAT
[ENA]
¡û
>W131061413
ANIR01000002
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
291980
291904
-
Ile
GAT
[ENA]
¡û
>W131061415
ANIR01000003
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
182238
182314
+
Ile
GAT
[ENA]
¡û
>W131061446
ANIR01000004
Gammaproteobacteria
Pseudomonas sp. M1 [ANIR]
924846
924922
+
Ile
GAT
[ENA]
¡û
>WENV181155504
OEID01208741
[OEID] soil metagenome; soil
87
11
-
Ile
GAT
[ENA]
¡û
>WENV181305702
OFIH01008073
[OFIH] marine metagenome; seawater
268
344
+
Ile
GAT
[ENA]
¡û
>WENV170537357
CEWR01001180
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
597
673
+
Ile
GAT
[ENA]
¡û
>WENV170557315
CXWL01024006
[CXWL] groundwater metagenome; biofilm material
2713
2637
-
Ile
GAT
[ENA]
¡û
>WENV170771994
LXNI01008194
[LXNI] sponge metagenome; marine sponge reef
2932
2856
-
Ile
GAT
[ENA]
¡û
>WENV170773768
LXNJ01012344
[LXNJ] sponge metagenome; marine sponge reef
2322
2246
-
Ile
GAT
[ENA]
¡û
>WENV170960465
MKWU01030658
[MKWU] sponge metagenome;
1012
936
-
Ile
GAT
[ENA]
¡û
>WENV170961173
MKWU01091011
[MKWU] sponge metagenome;
1006
930
-
Ile
GAT
[ENA]
¡û
>C191157641
CP038033
Gammaproteobacteria
Nitrosococcus wardiae D1FHS [CP038033]
3749217
3749141
-
Ile
GAT
-
¡û
>W1910549256
FZPC01000063
Gammaproteobacteria
Pseudomonas delhiensis RLD-1 [FZPC]
1782
1858
+
Ile
GAT
[ENA]
¡û
>W1911743731
QVNC01000724
Gammaproteobacteria
Pseudomonas sp. ATCC 13867 [QVNC]
218
142
-
Ile
GAT
[ENA]
¡û
>W1810017284
BGPP01000013
Gammaproteobacteria
Pseudomonas citronellolis LA18T [BGPP]
193
117
-
Ile
GAT
[ENA]
¡û
>W1810155601
PJAV01000064
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
291
215
-
Ile
GAT
[ENA]
¡û
>W1810176371
PJPV01000279
Gammaproteobacteria
Endozoicomonas acroporae Acr-14 [PJPV]
23
99
+
Ile
GAT
[ENA]
¡û
>W1810607799
QGSL01000091
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
901219
901295
+
Ile
GAT
[ENA]
¡û
>W1810607801
QGSL01000091
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
507852
507776
-
Ile
GAT
[ENA]
¡û
>W1810607811
QGSL01000106
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
1559172
1559096
-
Ile
GAT
[ENA]
¡û
>W1810607829
QGSL01000107
Gammaproteobacteria
Pseudomonas sp. RW407 [QGSL]
1733834
1733910
+
Ile
GAT
[ENA]
¡û
>C151102505
LM655252
Gammaproteobacteria
Candidatus Evansia muelleri [LM655252]
301267
301343
+
Ile
GAT
[Ensembl]
¡û
>W2010150248
CAADFD010000009
Gammaproteobacteria
Candidatus Kentron sp. FW [CAADFD]
1998
2073
+
Ile
GAT
[ENA]
¡û
>W2010150293
CAADFE010000014
Gammaproteobacteria
Candidatus Kentron sp. FW [CAADFE]
9969
10044
+
Ile
GAT
[ENA]
¡û
>W2010150924
CAADFS010000017
Gammaproteobacteria
Candidatus Kentron sp. TC [CAADFS]
4484
4408
-
Ile
GAT
[ENA]
¡û
>W2010150976
CAADFT010000024
Gammaproteobacteria
Candidatus Kentron sp. TC [CAADFT]
33136
33212
+
Ile
GAT
[ENA]
¡û
>W2010431017
FZPC01000063
Gammaproteobacteria
Pseudomonas delhiensis RLD-1 [FZPC]
1782
1858
+
Ile
GAT
[ENA]
¡û
>W2010802641
LZZY01000007
Gammaproteobacteria
Pseudomonas sp. UMC76 [LZZY]
109028
109104
+
Ile
GAT
[ENA]
¡û
>W2011308827
QVNC01000724
Gammaproteobacteria
Pseudomonas sp. ATCC 13867 [QVNC]
218
142
-
Ile
GAT
[ENA]
¡û
>W2011525323
SAUT01000181
Gammaproteobacteria
Endozoicomonas acroporae Acr-1 [SAUT]
131
207
+
Ile
GAT
[ENA]
¡û
>W2011525403
SAUU01000232
Gammaproteobacteria
Endozoicomonas acroporae Acr-5 [SAUU]
761
685
-
Ile
GAT
[ENA]
¡û
>W2011700142
SUQS01000100
Gammaproteobacteria
Pseudomonas sp. UMA603 [SUQS]
1720
1796
+
Ile
GAT
[ENA]
¡û
>W2110547579
JAGHQW010000227
Gammaproteobacteria
Salinisphaera sp. G21_0 [JAGHQW]
443
367
-
Ile
GAT
[ENA]
¡û
>C201205663
CP047698
Gammaproteobacteria
Pseudomonas knackmussii N1-2 [CP047698]
668249
668325
+
Ile
GAT
-
¡û
>C201205677
CP047698
Gammaproteobacteria
Pseudomonas knackmussii N1-2 [CP047698]
1897880
1897956
+
Ile
GAT
-
¡û
>C201205690
CP047698
Gammaproteobacteria
Pseudomonas knackmussii N1-2 [CP047698]
5955422
5955346
-
Ile
GAT
-
¡û
>C201205695
CP047698
Gammaproteobacteria
Pseudomonas knackmussii N1-2 [CP047698]
5189962
5189886
-
Ile
GAT
-
¡û
>C201205697
CP047698
Gammaproteobacteria
Pseudomonas knackmussii N1-2 [CP047698]
5184440
5184364
-
Ile
GAT
-
¡û
>C201281799
CP054689
Gammaproteobacteria
Ectothiorhodospiraceae bacterium 2226 [CP054689]
2041363
2041439
+
Ile
GAT
-
¡û
>C201281836
CP054689
Gammaproteobacteria
Ectothiorhodospiraceae bacterium 2226 [CP054689]
108547
108471
-
Ile
GAT
-
¡û
>C211157222
CP062122
Gammaproteobacteria
Pseudomonas sp. ADPe [CP062122]
3084463
3084539
+
Ile
GAT
-
¡û
>C211157254
CP062122
Gammaproteobacteria
Pseudomonas sp. ADPe [CP062122]
6279774
6279850
+
Ile
GAT
-
¡û
>C211157264
CP062122
Gammaproteobacteria
Pseudomonas sp. ADPe [CP062122]
2170099
2170023
-
Ile
GAT
-
¡û
>C211157278
CP062122
Gammaproteobacteria
Pseudomonas sp. ADPe [CP062122]
471239
471163
-
Ile
GAT
-
¡û
>C231316222
CP092417
Gammaproteobacteria
Endozoicomonas sp. SCSIO W0465 [CP092417]
6897351
6897275
-
Ile
GAT
-
¡û
>C231316224
CP092417
Gammaproteobacteria
Endozoicomonas sp. SCSIO W0465 [CP092417]
6729491
6729415
-
Ile
GAT
-
¡û
>C231441740
CP101752
Gammaproteobacteria
Pseudomonas citronellolis C12 [CP101752]
761871
761947
+
Ile
GAT
-
¡û
>C231441766
CP101752
Gammaproteobacteria
Pseudomonas citronellolis C12 [CP101752]
2429669
2429745
+
Ile
GAT
-
¡û
>C231441787
CP101752
Gammaproteobacteria
Pseudomonas citronellolis C12 [CP101752]
6170374
6170298
-
Ile
GAT
-
¡û
>C231496706
CP104727
Gammaproteobacteria
Pseudomonas citronellolis G5.80 [CP104727]
6723263
6723187
-
Ile
GAT
-
¡û
>C231496738
CP104727
Gammaproteobacteria
Pseudomonas citronellolis G5.80 [CP104727]
4121269
4121193
-
Ile
GAT
-
¡û
>C231545567
CP113096
Gammaproteobacteria
Pseudomonas citronellolis G5Li.T10 [CP113096]
2593783
2593859
+
Ile
GAT
-
¡û
>C231545599
CP113096
Gammaproteobacteria
Pseudomonas citronellolis G5Li.T10 [CP113096]
4936639
4936715
+
Ile
GAT
-
¡û
>C231545608
CP113096
Gammaproteobacteria
Pseudomonas citronellolis G5Li.T10 [CP113096]
6256202
6256126
-
Ile
GAT
-
¡û
>C231545619
CP113096
Gammaproteobacteria
Pseudomonas citronellolis G5Li.T10 [CP113096]
1707589
1707513
-
Ile
GAT
-
¡û
>C231545624
CP113096
Gammaproteobacteria
Pseudomonas citronellolis G5Li.T10 [CP113096]
808486
808410
-
Ile
GAT
-
¡û
>C231562055
CP114771
Gammaproteobacteria
Endozoicomonas sp. Tanguisson_1 [CP114771]
3949251
3949327
+
Ile
GAT
-
¡û
>C231562064
CP114771
Gammaproteobacteria
Endozoicomonas sp. Tanguisson_1 [CP114771]
4537647
4537723
+
Ile
GAT
-
¡û
>C231563180
CP114886
Gammaproteobacteria
Endozoicomonas sp. AP1-3 [CP114886]
401789
401865
+
Ile
GAT
-
¡û
>C231563189
CP114886
Gammaproteobacteria
Endozoicomonas sp. AP1-3 [CP114886]
995222
995298
+
Ile
GAT
-
¡û
>C231582559
CP116775
Gammaproteobacteria
Pseudomonas sp. 273 [CP116775]
307289
307365
+
Ile
GAT
-
¡û
>C231582568
CP116775
Gammaproteobacteria
Pseudomonas sp. 273 [CP116775]
2216329
2216405
+
Ile
GAT
-
¡û
>C231582573
CP116775
Gammaproteobacteria
Pseudomonas sp. 273 [CP116775]
2926087
2926163
+
Ile
GAT
-
¡û
>C231582583
CP116775
Gammaproteobacteria
Pseudomonas sp. 273 [CP116775]
6904227
6904303
+
Ile
GAT
-
¡û
>C231582589
CP116775
Gammaproteobacteria
Pseudomonas sp. 273 [CP116775]
6023070
6022994
-
Ile
GAT
-
¡û
>W2130024240
JADUCQ010000148
Gammaproteobacteria
Pseudomonas citronellolis PSB00011 [JADUCQ]
17
93
+
Ile
GAT
[ENA]
¡û
>C241369007
CP141948
Gammaproteobacteria
Pseudomonas citronellolis G5.41a [CP141948]
2327720
2327796
+
Ile
GAT
-
¡û
>C241369012
CP141948
Gammaproteobacteria
Pseudomonas citronellolis G5.41a [CP141948]
3252573
3252649
+
Ile
GAT
-
¡û
>C241369020
CP141948
Gammaproteobacteria
Pseudomonas citronellolis G5.41a [CP141948]
4570258
4570334
+
Ile
GAT
-
¡û
>C241369042
CP141948
Gammaproteobacteria
Pseudomonas citronellolis G5.41a [CP141948]
1435438
1435362
-
Ile
GAT
-
¡û
>C161067318
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
794792
794868
+
Ile
GAT
[Ensembl]
¡û
>C161067351
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
3206960
3207036
+
Ile
GAT
[Ensembl]
¡û
>C161067360
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
6811877
6811801
-
Ile
GAT
[Ensembl]
¡û
>C161067364
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
5954282
5954206
-
Ile
GAT
[Ensembl]
¡û
>C161067372
CP014158
Gammaproteobacteria
Pseudomonas citronellolis P3B5 [CP014158]
4532168
4532092
-
Ile
GAT
[Ensembl]
¡û
>W1610670103
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
1645832
1645908
+
Ile
GAT
[ENA]
¡û
>W1610670134
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
4819606
4819682
+
Ile
GAT
[ENA]
¡û
>W1610670144
LKAX01000007
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
730334
730258
-
Ile
GAT
[ENA]
¡û
>W1610670162
LKAX01000011
Gammaproteobacteria
Pseudomonas sp. ADP [LKAX]
964003
963927
-
Ile
GAT
[ENA]
¡û
>W1610677483
LKJO01000038
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
1729
1805
+
Ile
GAT
[ENA]
¡û
>W1610677490
LKJO01000068
Gammaproteobacteria
Pseudomonas citronellolis [LKJO]
124
200
+
Ile
GAT
[ENA]
¡û
>W1610679874
LKKN01000129
Gammaproteobacteria
Pseudomonas citronellolis [LKKN]
1729
1805
+
Ile
GAT
[ENA]
¡û
>W1610935895
LUKQ01000858
Gammaproteobacteria
Endozoicomonas atrinae [LUKQ]
436
360
-
Ile
GAT
[ENA]
¡û
>ENV000059
AB236007
Environmental sample from ENV division of INSDC
152
230
+
Ile
GAT
[ENA]
>W1710076034
BDAD01000041
Gammaproteobacteria
Pseudomonas jinjuensis NBRC 103047 [BDAD]
1713
1789
+
Ile
GAT
[ENA]
¡û
>W1710082271
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
2369105
2369181
+
Ile
GAT
[ENA]
¡û
>W1710082275
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
3149895
3149971
+
Ile
GAT
[ENA]
¡û
>W1710082289
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
4464534
4464610
+
Ile
GAT
[ENA]
¡û
>W1710082302
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
5795720
5795644
-
Ile
GAT
[ENA]
¡û
>W1710082313
BDGS01000001
Gammaproteobacteria
Pseudomonas humi CCA 1 [BDGS]
1367015
1366939
-
Ile
GAT
[ENA]
¡û
>W1710518588
FNEC01000097
Gammaproteobacteria
Pseudomonas delhiensis [FNEC]
96
20
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK