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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.203616 (130 seq.)
>W131180840
ARNL01000036
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
49738
49814
+
Met
CAT
[ENA]
¡û
>W1711621270
MPCY01000038
Alphaproteobacteria
Roseobacter sp. MedPE-SW [MPCY]
15655
15579
-
Met
CAT
[ENA]
¡û
>W1711621291
MPCZ01000002
Alphaproteobacteria
Roseobacter sp. MedPE-SWchi [MPCZ]
69577
69501
-
Met
CAT
[ENA]
¡û
>W1711621334
MPDA01000005
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
197690
197766
+
Met
CAT
[ENA]
¡û
>W1711798580
MWVJ01000006
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
105131
105207
+
Met
CAT
[ENA]
¡û
>w023717
AAYC01000005
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
217046
217124
+
Met
CAT
[ENA]
¡û
>w013103
AANB01000001
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
166637
166559
-
Met
CAT
[ENA]
¡û
>w012748
AAMS01000006
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
189688
189764
+
Met
CAT
[ENA]
¡û
>C171118971
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
762818
762742
-
Met
CAT
-
¡û
>WENV180109287
OAPJ01064217
[OAPJ] marine metagenome; ENVO 00002150
224
148
-
Met
CAT
[ENA]
¡û
>WENV180113945
OAPR01065927
[OAPR] marine metagenome; seawater
350
274
-
Met
CAT
[ENA]
¡û
>WENV180383230
OBOU01012225
[OBOU] marine metagenome; ENV:00002010
85
9
-
Met
CAT
[ENA]
¡û
>WENV180383834
OBOV01037855
[OBOV] marine metagenome; ENV:00002010
298
222
-
Met
CAT
[ENA]
¡û
>WENV180396400
OBPV01001972
[OBPV] marine metagenome; ENVO:00002010
1419
1495
+
Met
CAT
[ENA]
¡û
>WENV180594025
OCOY01013530
[OCOY] marine metagenome; ENVO:00002010
577
653
+
Met
CAT
[ENA]
¡û
>WENV180595357
OCPD01009627
[OCPD] marine metagenome; Mesotrophic water
227
303
+
Met
CAT
[ENA]
¡û
>WENV181325548
OFLJ01004280
[OFLJ] seawater metagenome; seawater
130
206
+
Met
CAT
[ENA]
¡û
>W141151639
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
2903528
2903604
+
Met
CAT
[ENA]
¡û
>WENV182551462
OJCC01012458
[OJCC] seawater metagenome; Sea water
504
428
-
Met
CAT
[ENA]
¡û
>WENV182558050
OJDL01002702
[OJDL] seawater metagenome; Sea water
3529
3453
-
Met
CAT
[ENA]
¡û
>WENV182564944
OJEF01018696
[OJEF] seawater metagenome; Sea water
433
509
+
Met
CAT
[ENA]
¡û
>WENV182578853
OJGP01007270
[OJGP] seawater metagenome; Sea water
201
125
-
Met
CAT
[ENA]
¡û
>WENV182585027
OJHH01000280
[OJHH] seawater metagenome; Sea water
10100
10024
-
Met
CAT
[ENA]
¡û
>W141284787
JAMD01000008
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
58777
58853
+
Met
CAT
[ENA]
¡û
>WENV183062493
OLID01024037
[OLID] seawater metagenome; Sea water
276
200
-
Met
CAT
[ENA]
¡û
>WENV183619410
OOFQ01004270
[OOFQ] marine metagenome; seawater
130
206
+
Met
CAT
[ENA]
¡û
>WENV183625252
OOGF01007186
[OOGF] marine metagenome; seawater
693
769
+
Met
CAT
[ENA]
¡û
>WENV170014900
AZIC01003671
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
592
668
+
Met
CAT
[ENA]
¡û
>WENV170567961
FLMP01011143
[FLMP] seawater metagenome; seawater
2372
2296
-
Met
CAT
[ENA]
¡û
>WENV170601738
FUWD010191038
[FUWD] metagenome; unknown
568
492
-
Met
CAT
[ENA]
¡û
>C181064498
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
2763630
2763554
-
Met
CAT
-
¡û
>W141564906
JIBC01000009
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
159345
159421
+
Met
CAT
[ENA]
¡û
>W1910005029
AWWI01000141
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
70795
70719
-
Met
CAT
[ENA]
¡û
>W1910499009
FXXP01000001
Alphaproteobacteria
Tropicibacter phthalicicus CECT 8649 [FXXP]
1691833
1691757
-
Met
CAT
[ENA]
¡û
>W1910499890
FXYH01000034
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
12664
12740
+
Met
CAT
[ENA]
¡û
>W1910547111
FZNN01000008
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
43057
43133
+
Met
CAT
[ENA]
¡û
>W1911538688
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
678619
678695
+
Met
CAT
[ENA]
¡û
>W1911539214
OMPQ01000008
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
638779
638855
+
Met
CAT
[ENA]
¡û
>W1911539947
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
940516
940440
-
Met
CAT
[ENA]
¡û
>W1810494771
QBFE01000024
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
1012426
1012502
+
Met
CAT
[ENA]
¡û
>W1810494784
QBFF01000018
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
17513
17589
+
Met
CAT
[ENA]
¡û
>W1810676771
QKMF01000022
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
1182
1106
-
Met
CAT
[ENA]
¡û
>W1810725085
QOCG01000030
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
119795
119871
+
Met
CAT
[ENA]
¡û
>W2010073375
AWWI01000141
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
70795
70719
-
Met
CAT
[ENA]
¡û
>W2010418712
FXXP01000001
Alphaproteobacteria
Tropicibacter phthalicicus CECT 8649 [FXXP]
1691833
1691757
-
Met
CAT
[ENA]
¡û
>W2010419593
FXYH01000034
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
12664
12740
+
Met
CAT
[ENA]
¡û
>W2010428872
FZNN01000008
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
43057
43133
+
Met
CAT
[ENA]
¡û
>W2010731956
JACIJM010000002
Alphaproteobacteria
Loktanella ponticola DSM 101064 [JACIJM]
13010
13086
+
Met
CAT
[ENA]
¡û
>W2011168918
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
678619
678695
+
Met
CAT
[ENA]
¡û
>W2011169489
OMPQ01000008
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
638779
638855
+
Met
CAT
[ENA]
¡û
>W2011170222
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
940516
940440
-
Met
CAT
[ENA]
¡û
>W2011653652
SOAP01000001
Alphaproteobacteria
Tropicibacter phthalicicus DSM 26923 [SOAP]
396348
396424
+
Met
CAT
[ENA]
¡û
>W2011686079
SRXY01000003
Alphaproteobacteria
Primorskyibacter sp. XY-301 [SRXY]
26122
26046
-
Met
CAT
[ENA]
¡û
>W2011696388
SULI01000002
Alphaproteobacteria
Pelagicola litoralis CL-ES2 [SULI]
161918
161994
+
Met
CAT
[ENA]
¡û
>SRA1051652
SRR035098.49493
454 Sequencing (SRP001819)
399
323
-
Met
CAT
[SRA]
>W2012105014
VOJI01000014
Alphaproteobacteria
Puniceibacterium confluentis JSSK-17 [VOJI]
37583
37507
-
Met
CAT
[ENA]
¡û
>SRA1052411
SRR035098.197669
454 Sequencing (SRP001819)
265
189
-
Met
CAT
[SRA]
>SRA1053381
SRR035098.395499
454 Sequencing (SRP001819)
139
63
-
Met
CAT
[SRA]
>SRA1053495
SRR035098.418102
454 Sequencing (SRP001819)
152
76
-
Met
CAT
[SRA]
>W2110140438
JAAFZU010000093
Alphaproteobacteria
Loktanella sp. SALINAS62 [JAAFZU]
1979
1903
-
Met
CAT
[ENA]
¡û
>ENV09003954
ADIF01002308
Marine metagenome apSum_C1
586
662
+
Met
CAT
[ENA]
¡û
>W2110303342
JADCKQ010000021
Alphaproteobacteria
Rhodobacteraceae bacterium MYP1-1 [JADCKQ]
130
206
+
Met
CAT
[ENA]
¡û
>W2110547881
JAGHRD010000003
Alphaproteobacteria
Tropicibacter sp. R15_0 [JAGHRD]
238407
238483
+
Met
CAT
[ENA]
¡û
>W2110685716
JAIMIA010000102
Alphaproteobacteria
Tateyamaria pelophila DSM 17270 [JAIMIA]
14028
14104
+
Met
CAT
[ENA]
¡û
>W2110716955
JAJATZ010000004
Alphaproteobacteria
Loktanella sp. TSTF-M6 [JAJATZ]
197886
197810
-
Met
CAT
[ENA]
¡û
>C231129559
CP072991
Alphaproteobacteria
Loktanella salsilacus 1A07893 [CP072991]
547059
546983
-
Met
CAT
-
¡û
>C231129604
CP072994
Alphaproteobacteria
Loktanella salsilacus 1A07899 [CP072994]
555041
554965
-
Met
CAT
-
¡û
>C231169950
CP081161
Alphaproteobacteria
Rhodobacteraceae bacterium S2214 [CP081161]
762085
762009
-
Met
CAT
-
¡û
>C231204163
CP085154
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 [CP085154]
3200949
3200873
-
Met
CAT
-
¡û
>C231232721
CP086764
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-74 [CP086764]
704525
704449
-
Met
CAT
-
¡û
>C231232728
CP086775
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-69 [CP086775]
177955
178031
+
Met
CAT
-
¡û
>C231232775
CP086783
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-68 [CP086783]
1362032
1362108
+
Met
CAT
-
¡û
>C231232818
CP086790
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-67 [CP086790]
1362033
1362109
+
Met
CAT
-
¡û
>C231232860
CP086798
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-47 [CP086798]
860781
860857
+
Met
CAT
-
¡û
>C231232903
CP086808
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-54 [CP086808]
906175
906251
+
Met
CAT
-
¡û
>C231232960
CP086816
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-52 [CP086816]
3753000
3752924
-
Met
CAT
-
¡û
>C231232990
CP086824
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-5 [CP086824]
1362032
1362108
+
Met
CAT
-
¡û
>C231233053
CP086832
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-33 [CP086832]
2487221
2487145
-
Met
CAT
-
¡û
>C231233088
CP086839
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-31 [CP086839]
3067488
3067564
+
Met
CAT
-
¡û
>C231233119
CP086847
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-87 [CP086847]
1348760
1348836
+
Met
CAT
-
¡û
>C231233181
CP086854
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-25 [CP086854]
2844947
2844871
-
Met
CAT
-
¡û
>C231233237
CP086862
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-17 [CP086862]
747874
747798
-
Met
CAT
-
¡û
>C231233267
CP086870
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-97 [CP086870]
2986052
2985976
-
Met
CAT
-
¡û
>C231233290
CP086877
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-89 [CP086877]
854588
854664
+
Met
CAT
-
¡û
>C231233353
CP086886
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-67 [CP086886]
2992246
2992170
-
Met
CAT
-
¡û
>C231233396
CP086894
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-37 [CP086894]
2996091
2996015
-
Met
CAT
-
¡û
>C231233432
CP086901
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-35 [CP086901]
3067506
3067582
+
Met
CAT
-
¡û
>C231233497
CP086909
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-34 [CP086909]
169676
169600
-
Met
CAT
-
¡û
>C231233505
CP086919
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-32 [CP086919]
860779
860855
+
Met
CAT
-
¡û
>C231233545
CP086930
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-30 [CP086930]
177953
178029
+
Met
CAT
-
¡û
>C231233609
CP086938
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-29 [CP086938]
3118880
3118804
-
Met
CAT
-
¡û
>C231233652
CP086947
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-28 [CP086947]
3571919
3571843
-
Met
CAT
-
¡û
>C231233697
CP086954
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-27 [CP086954]
2996100
2996024
-
Met
CAT
-
¡û
>C231233733
CP086963
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-15 [CP086963]
3063041
3063117
+
Met
CAT
-
¡û
>C231233764
CP086971
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-114 [CP086971]
1362029
1362105
+
Met
CAT
-
¡û
>C231233826
CP086979
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-111 [CP086979]
2995377
2995301
-
Met
CAT
-
¡û
>C231233863
CP086986
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-110 [CP086986]
3677162
3677086
-
Met
CAT
-
¡û
>C231233892
CP086995
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-109 [CP086995]
860778
860854
+
Met
CAT
-
¡û
>C231233955
CP087002
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-105 [CP087002]
2995365
2995289
-
Met
CAT
-
¡û
>C231233979
CP087009
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-71 [CP087009]
1362031
1362107
+
Met
CAT
-
¡û
>C231234018
CP087016
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-70 [CP087016]
177956
178032
+
Met
CAT
-
¡û
>C231234085
CP087025
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-68 [CP087025]
2499481
2499405
-
Met
CAT
-
¡û
>C231234107
CP087032
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-67 [CP087032]
860780
860856
+
Met
CAT
-
¡û
>C231234175
CP087042
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-18 [CP087042]
1644885
1644809
-
Met
CAT
-
¡û
>C231234193
CP087051
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-43 [CP087051]
860782
860858
+
Met
CAT
-
¡û
>C231234236
CP087059
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-24 [CP087059]
860780
860856
+
Met
CAT
-
¡û
>C231234300
CP087066
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-22 [CP087066]
2495002
2494926
-
Met
CAT
-
¡û
>C231234319
CP087073
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-14 [CP087073]
177956
178032
+
Met
CAT
-
¡û
>C231234395
CP087083
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-1 [CP087083]
1089695
1089619
-
Met
CAT
-
¡û
>C231234409
CP087090
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-26 [CP087090]
1362021
1362097
+
Met
CAT
-
¡û
>C231484905
CP104100
Alphaproteobacteria
Phaeobacter sp. G2 [CP104100]
1067326
1067250
-
Met
CAT
-
¡û
>C241068893
CP042819
Alphaproteobacteria
Octadecabacter sp. SW4 [CP042819]
2807835
2807911
+
Met
CAT
-
¡û
>C241167684
CP054599
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H46 [CP054599]
633952
634028
+
Met
CAT
-
¡û
>C241253909
CP124616
Alphaproteobacteria
Tropicibacter oceani YMD87 [CP124616]
3441604
3441680
+
Met
CAT
-
¡û
>W1510647425
CVPC01000006
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
96002
96078
+
Met
CAT
[ENA]
¡û
>W1510650120
CVQV01000006
Alphaproteobacteria
Nereida ignava CECT 5292 [CVQV]
96002
96078
+
Met
CAT
[ENA]
¡û
>W1511640245
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
3384856
3384932
+
Met
CAT
[ENA]
¡û
>W1610092903
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
579590
579514
-
Met
CAT
[ENA]
¡û
>W1610630889
LIKT01000002
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
47625
47549
-
Met
CAT
[ENA]
¡û
>W1610641260
LJAK01000009
Alphaproteobacteria
Loktanella sp. 3ANDIMAR09 [LJAK]
26033
26109
+
Met
CAT
[ENA]
¡û
>WENV078199
AAFZ01006906
Fossil microbial community from Whale Fall (Santa Cruz Basin)
110
188
+
Met
CAT
[ENA]
>W1710096158
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
579590
579514
-
Met
CAT
[ENA]
¡û
>W1710546625
FOCI01000004
Alphaproteobacteria
Loktanella fryxellensis [FOCI]
52579
52655
+
Met
CAT
[ENA]
¡û
>W1710549216
FOEJ01000002
Alphaproteobacteria
Loktanella sp. DSM 29012 [FOEJ]
321823
321899
+
Met
CAT
[ENA]
¡û
>W1710566455
FORZ01000006
Alphaproteobacteria
Nereida ignava DSM 16309 [FORZ]
98788
98712
-
Met
CAT
[ENA]
¡û
>W1710568022
FOTF01000019
Alphaproteobacteria
Loktanella salsilacus [FOTF]
46006
46082
+
Met
CAT
[ENA]
¡û
>W1710574878
FOYP01000001
Alphaproteobacteria
Yoonia tamlensis [FOYP]
2010316
2010392
+
Met
CAT
[ENA]
¡û
>W1710582677
FQUE01000002
Alphaproteobacteria
Loktanella atrilutea [FQUE]
29868
29944
+
Met
CAT
[ENA]
¡û
>W1710584526
FQVP01000003
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
80781
80857
+
Met
CAT
[ENA]
¡û
>W1710606550
FWXX01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
317853
317929
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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