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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204029 (92 seq.)
>W1710894071
LNFJ01000021
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
22351
22275
-
Asn
GTT
[ENA]
¡û
>W1711503816
MKTY01000020
Bacteroidota
Sphingobacteriales bacterium 46-32 [MKTY]
754376
754450
+
Asn
GTT
[ENA]
¡û
>W1711510307
MLAV01000070
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
75
1
-
Asn
GTT
[ENA]
¡û
>W131228874
AUGI01000032
Bacteroidota
Hugenholtzia roseola DSM 9546 [AUGI]
62806
62730
-
Asn
GTT
[ENA]
¡û
>WENV180024995
FTIL01013610
[FTIL] metagenome; soil
241
316
+
Asn
GTT
[ENA]
¡û
>WENV180035779
FTLB01008046
[FTLB] metagenome; soil
1782
1708
-
Asn
GTT
[ENA]
¡û
>WENV180094708
MTBK01026402
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3429
3503
+
Asn
GTT
[ENA]
¡û
>WENV180098007
MTBK01222869
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1714
1640
-
Asn
GTT
[ENA]
¡û
>WENV180315100
OBKH01018004
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
382
456
+
Asn
GTT
[ENA]
¡û
>WENV180591917
OCOV01136111
[OCOV] marine metagenome; ENVO:01000301
9
83
+
Asn
GTT
[ENA]
¡û
>WENV181167499
OEIU01036356
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
702
776
+
Asn
GTT
[ENA]
¡û
>WENV181402060
OFTY01000072
[OFTY] sludge metagenome; sludge
106783
106857
+
Asn
GTT
[ENA]
¡û
>WENV181402113
OFTY01000127
[OFTY] sludge metagenome; sludge
73703
73777
+
Asn
GTT
[ENA]
¡û
>WENV181402413
OFTY01001257
[OFTY] sludge metagenome; sludge
4146
4072
-
Asn
GTT
[ENA]
¡û
>WENV181840750
OGVP01012844
[OGVP] freshwater metagenome; freshwater
565
641
+
Asn
GTT
[ENA]
¡û
>WENV181847800
OGVZ01000125
[OGVZ] freshwater metagenome; freshwater
3219
3293
+
Asn
GTT
[ENA]
¡û
>WENV181852717
OGWH01000898
[OGWH] freshwater metagenome; freshwater
4160
4084
-
Asn
GTT
[ENA]
¡û
>WENV183092803
OLLL01000224
[OLLL] soil metagenome; soil
310191
310117
-
Asn
GTT
[ENA]
¡û
>WENV183706601
PDWI01004795
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
90
16
-
Asn
GTT
[ENA]
¡û
>WENV183713058
PDWI01122855
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
95
21
-
Asn
GTT
[ENA]
¡û
>WENV183715123
PDWI01222332
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1126
1200
+
Asn
GTT
[ENA]
¡û
>WENV183728760
PJTQ01000411
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25808
25882
+
Asn
GTT
[ENA]
¡û
>WENV183729166
PJTQ01008004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
19
93
+
Asn
GTT
[ENA]
¡û
>WENV183729604
PJTQ01087849
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
10
84
+
Asn
GTT
[ENA]
¡û
>WENV183737497
PJUD01010936
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
486
412
-
Asn
GTT
[ENA]
¡û
>WENV183738250
PJUD01136562
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8
82
+
Asn
GTT
[ENA]
¡û
>WENV170467175
CEVE01121386
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
329
405
+
Asn
GTT
[ENA]
¡û
>WENV170677513
LDZT01006172
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3583
3509
-
Asn
GTT
[ENA]
¡û
>WENV170890936
MDTD01016844
[MDTD] marine metagenome; seawater
6740
6816
+
Asn
GTT
[ENA]
¡û
>WENV170901408
MDTD01170081
[MDTD] marine metagenome; seawater
11
85
+
Asn
GTT
[ENA]
¡û
>WENV170901475
MDTD01171076
[MDTD] marine metagenome; seawater
11
85
+
Asn
GTT
[ENA]
¡û
>WENV170987357
MWVX01177223
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
180
256
+
Asn
GTT
[ENA]
¡û
>WENV170987927
MWVX01314089
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
369
445
+
Asn
GTT
[ENA]
¡û
>WENV170989722
MWVZ01087957
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
410
334
-
Asn
GTT
[ENA]
¡û
>WENV170995980
MWWF01108277
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
355
431
+
Asn
GTT
[ENA]
¡û
>WENV170996268
MWWF01199795
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
297
371
+
Asn
GTT
[ENA]
¡û
>C191085415
CP032157
Bacteroidota
Paraflavitalea soli 5GH32-13 [CP032157]
6288589
6288515
-
Asn
GTT
-
¡û
>C191153643
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
382160
382234
+
Asn
GTT
-
¡û
>W09108587
ABTK01000001
Bacteroidota
Chitinophaga pinensis DSM 2588 [ABTK]
3612593
3612667
+
Asn
GTT
[ENA]
¡û
>SRA1003607
SRR002327.65731
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
68
142
+
Asn
GTT
[SRA]
>SRA1003933
SRR002328.47061
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
195
269
+
Asn
GTT
[SRA]
>SRA1004309
SRR002328.263258
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
105
179
+
Asn
GTT
[SRA]
>W1810532549
QCYK01000001
Bacteroidota
Chitinophaga parva LY-1 [QCYK]
762783
762857
+
Asn
GTT
[ENA]
¡û
>W1810721923
QNTR01000001
Bacteroidota
Chitinophaga arvensicola 10_5 24_1 [QNTR]
619302
619376
+
Asn
GTT
[ENA]
¡û
>W1810762368
QPMM01000004
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
387398
387472
+
Asn
GTT
[ENA]
¡û
>W1810762412
QPMM01000021
Bacteroidota
Chitinophaga silvatica GDMCC 1.1288 [QPMM]
27721
27647
-
Asn
GTT
[ENA]
¡û
>C151016377
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
3387341
3387417
+
Asn
GTT
[Ensembl]
¡û
>W2010106723
BKAT01000026
Bacteroidota
Chitinophaga terrae Kim and Jung 2007 NBRC 109751 [BKAT]
19201
19275
+
Asn
GTT
[ENA]
¡û
>W2010106738
BKAT01000052
Bacteroidota
Chitinophaga terrae Kim and Jung 2007 NBRC 109751 [BKAT]
69621
69697
+
Asn
GTT
[ENA]
¡û
>W2010213359
CABHMS010000008
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
137410
137484
+
Asn
GTT
[ENA]
¡û
>W2010213417
CABHMT010000017
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
80348
80422
+
Asn
GTT
[ENA]
¡û
>W2010445824
JAABOK010000003
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
294739
294813
+
Asn
GTT
[ENA]
¡û
>W2010447462
JAACJR010000014
Bacteroidota
Sediminibacterium sp. WSJ-3 [JAACJR]
47913
47839
-
Asn
GTT
[ENA]
¡û
>W2010585539
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
2626378
2626304
-
Asn
GTT
[ENA]
¡û
>W2010585540
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
2623923
2623849
-
Asn
GTT
[ENA]
¡û
>W2011402481
RCSU01000022
Bacteroidota
Pseudoflavitalea rhizosphaerae KACC 18655 [RCSU]
11979
11905
-
Asn
GTT
[ENA]
¡û
>W2011404226
RCWL01000001
Bacteroidota
Chitinophagaceae bacterium HBUM179779 [RCWL]
5270
5195
-
Asn
GTT
[ENA]
¡û
>W2011429055
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
5619632
5619558
-
Asn
GTT
[ENA]
¡û
>W2011432240
RJJR01000013
Bacteroidota
Ferruginibacter sp. BO-59 [RJJR]
148679
148753
+
Asn
GTT
[ENA]
¡û
>W2011694126
STFF01000005
Bacteroidota
Niastella sp. HX-16-21 [STFF]
151019
150945
-
Asn
GTT
[ENA]
¡û
>W2012047821
VIWA01000003
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
551505
551579
+
Asn
GTT
[ENA]
¡û
>W2012082534
VLLG01000002
Bacteroidota
Chitinophaga japonensis DSM 13484 [VLLG]
1176948
1176874
-
Asn
GTT
[ENA]
¡û
>W2012103431
VOHS01000001
Bacteroidota
Chitinophaga pinensis YS-16 [VOHS]
2320
2246
-
Asn
GTT
[ENA]
¡û
>W2012156551
VUOC01000001
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
599577
599503
-
Asn
GTT
[ENA]
¡û
>W2110269419
JACVFB010000002
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
962108
962182
+
Asn
GTT
[ENA]
¡û
>W2110269487
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
3601947
3601873
-
Asn
GTT
[ENA]
¡û
>W2110269488
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
3596743
3596669
-
Asn
GTT
[ENA]
¡û
>W2110597231
JAHEAH010000005
Bacteroidota
Flavihumibacter sp. IMCC34838 [JAHEAH]
373462
373536
+
Asn
GTT
[ENA]
¡û
>W2110597257
JAHEAI010000001
Bacteroidota
Flavihumibacter sp. IMCC34837 [JAHEAI]
4187291
4187217
-
Asn
GTT
[ENA]
¡û
>W2110649196
JAHUWJ010000001
Bacteroidota
Chitinophaga sp. sic0106 [JAHUWJ]
88592
88666
+
Asn
GTT
[ENA]
¡û
>W2110649197
JAHUWJ010000001
Bacteroidota
Chitinophaga sp. sic0106 [JAHUWJ]
92941
93015
+
Asn
GTT
[ENA]
¡û
>W2110692666
JAIQDI010000001
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
2516013
2516087
+
Asn
GTT
[ENA]
¡û
>C211324997
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
5369493
5369567
+
Asn
GTT
-
¡û
>C211324998
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
5372172
5372246
+
Asn
GTT
-
¡û
>W1510010442
BBLT01000002
Bacteroidota
Sporocytophaga myxococcoides PG-01 [BBLT]
115849
115773
-
Asn
GTT
[ENA]
¡û
>W1510010443
BBLT01000002
Bacteroidota
Sporocytophaga myxococcoides PG-01 [BBLT]
115651
115575
-
Asn
GTT
[ENA]
¡û
>W1510019442
BBWV01000001
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
2178452
2178376
-
Asn
GTT
[ENA]
¡û
>C231156267
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
6583283
6583357
+
Asn
GTT
-
¡û
>W2110748380
MBUA01000012
Bacteroidota
Flavihumibacter stibioxidans YS-17 [MBUA]
653380
653454
+
Asn
GTT
[ENA]
¡û
>C231364569
CP095855
Bacteroidota
Chitinophaga filiformis YT5 [CP095855]
730855
730781
-
Asn
GTT
-
¡û
>C231507267
CP107006
Bacteroidota
Chitinophaga sp. R8 [CP107006]
5356815
5356741
-
Asn
GTT
-
¡û
>C231619849
CP119311
Bacteroidota
Pseudobacter sp. [CP119311]
1502028
1501954
-
Asn
GTT
-
¡û
>C241149279
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
365924
365998
+
Asn
GTT
-
¡û
>W1511300693
JPHF01000001
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
16680
16606
-
Asn
GTT
[ENA]
¡û
>W121017767
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
1158453
1158529
+
Asn
GTT
[ENA]
¡û
>W1610613649
LGGC01000025
Bacteroidota
Bacteroidetes bacterium 38_7 [LGGC]
3583
3509
-
Asn
GTT
[ENA]
¡û
>W1610617787
LGYU01000005
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
152091
152165
+
Asn
GTT
[ENA]
¡û
>W1610754337
LNFJ01000021
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
22351
22275
-
Asn
GTT
[ENA]
¡û
>W1610935533
LUKG01000064
Bacteroidota
Flavihumibacter sp. CACIAM 22H1 [LUKG]
19649
19723
+
Asn
GTT
[ENA]
¡û
>W1710515118
FNBN01000001
Bacteroidota
Chitinophaga filiformis [FNBN]
1287541
1287465
-
Asn
GTT
[ENA]
¡û
>W1710734821
LGGC01000025
Bacteroidota
Bacteroidetes bacterium 38_7 [LGGC]
3583
3509
-
Asn
GTT
[ENA]
¡û
>W1710743840
LGYU01000005
Bacteroidota
Chitinophagaceae bacterium PMP191F [LGYU]
152091
152165
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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