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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204521 (54 seq.)
>W1711069044
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
531
606
+
Met
CAT
[ENA]
¡û
>W1711069050
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
1123
1198
+
Met
CAT
[ENA]
¡û
>C171015387
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2267198
2267123
-
Met
CAT
-
¡û
>C171015393
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2266606
2266531
-
Met
CAT
-
¡û
>C171129741
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1016133
1016208
+
Met
CAT
-
¡û
>C171129748
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1016766
1016841
+
Met
CAT
-
¡û
>WENV180019016
FTBF01000200
[FTBF] metagenome; soil
12727
12803
+
fMet
CAT
[ENA]
¡û
>WENV170555603
CXWL01001349
[CXWL] groundwater metagenome; biofilm material
4202
4278
+
Met
CAT
[ENA]
¡û
>W1910007437
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
498
573
+
Met
CAT
[ENA]
¡û
>W1910007443
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
1094
1169
+
Met
CAT
[ENA]
¡û
>W1910007504
BDEB01000257
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
353
278
-
Met
CAT
[ENA]
¡û
>W1910007511
BDEB01000258
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
115
40
-
Met
CAT
[ENA]
¡û
>W1910007643
BDEE01000031
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
417
492
+
Met
CAT
[ENA]
¡û
>W1910007648
BDEE01000032
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
328
403
+
Met
CAT
[ENA]
¡û
>W1910007729
BDEF01000204
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
281
206
-
Met
CAT
[ENA]
¡û
>W1910007754
BDEG01000164
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
194
119
-
Met
CAT
[ENA]
¡û
>W1910007769
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
405
480
+
Met
CAT
[ENA]
¡û
>W1910007775
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
997
1072
+
Met
CAT
[ENA]
¡û
>W1911593471
PKOU01000007
Bacillota
Tetragenococcus halophilus R23 [PKOU]
62123
62048
-
Met
CAT
[ENA]
¡û
>W1911593483
PKOU01000009
Bacillota
Tetragenococcus halophilus R23 [PKOU]
785
710
-
Met
CAT
[ENA]
¡û
>W1911593489
PKOU01000009
Bacillota
Tetragenococcus halophilus R23 [PKOU]
191
116
-
Met
CAT
[ENA]
¡û
>W2010076738
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
498
573
+
fMet
CAT
[ENA]
¡û
>W2010076744
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
1094
1169
+
fMet
CAT
[ENA]
¡û
>W2010076765
BDEA01000156
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
140
215
+
fMet
CAT
[ENA]
¡û
>W2010076800
BDEB01000198
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
77
2
-
fMet
CAT
[ENA]
¡û
>W2010076805
BDEB01000257
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
353
278
-
fMet
CAT
[ENA]
¡û
>W2010076812
BDEB01000258
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
115
40
-
fMet
CAT
[ENA]
¡û
>W2010076944
BDEE01000031
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
417
492
+
fMet
CAT
[ENA]
¡û
>W2010076949
BDEE01000032
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
328
403
+
fMet
CAT
[ENA]
¡û
>W2010076963
BDEE01000100
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
77
2
-
fMet
CAT
[ENA]
¡û
>W2010076997
BDEF01000078
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
77
2
-
fMet
CAT
[ENA]
¡û
>W2010077030
BDEF01000204
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
281
206
-
fMet
CAT
[ENA]
¡û
>W2010077055
BDEG01000164
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
194
119
-
fMet
CAT
[ENA]
¡û
>W2010077070
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
405
480
+
fMet
CAT
[ENA]
¡û
>W2010077076
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
997
1072
+
fMet
CAT
[ENA]
¡û
>W2010595586
JABEVO010000024
Bacillota
Tetragenococcus halophilus KG12 [JABEVO]
1198
1273
+
fMet
CAT
[ENA]
¡û
>W2010595592
JABEVO010000024
Bacillota
Tetragenococcus halophilus KG12 [JABEVO]
1790
1865
+
fMet
CAT
[ENA]
¡û
>W2010631792
JABTEK010000001
Bacillota
Tetragenococcus halophilus KG11 [JABTEK]
6619
6694
+
fMet
CAT
[ENA]
¡û
>W2011423166
RHOT01000025
Bacillota
Lactobacillus sp. 143-1 [RHOT]
14138
14213
+
fMet
CAT
[ENA]
¡û
>W2011423240
RHOV01000005
Bacillota
Lactobacillus sp. 247-4 [RHOV]
10870
10945
+
fMet
CAT
[ENA]
¡û
>W2110015543
BKBM01000037
Bacillota
Tetragenococcus halophilus 8C9 [BKBM]
559
634
+
fMet
CAT
[ENA]
¡û
>W2110015548
BKBM01000037
Bacillota
Tetragenococcus halophilus 8C9 [BKBM]
1152
1227
+
fMet
CAT
[ENA]
¡û
>W2110016422
BLRM01000013
Bacillota
Tetragenococcus halophilus WJ7 [BLRM]
25490
25415
-
fMet
CAT
[ENA]
¡û
>W2110016469
BLRN01000013
Bacillota
Tetragenococcus halophilus YA163 [BLRN]
2198
2123
-
fMet
CAT
[ENA]
¡û
>W2110016576
BLRP01000011
Bacillota
Tetragenococcus halophilus YG2 [BLRP]
2198
2123
-
fMet
CAT
[ENA]
¡û
>C211365014
CP078164
Bacillota
Tetragenococcus halophilus CY54 [CP078164]
2411571
2411496
-
fMet
CAT
-
¡û
>C211365020
CP078164
Bacillota
Tetragenococcus halophilus CY54 [CP078164]
2410977
2410902
-
fMet
CAT
-
¡û
>W2310019317
BROC01000022
Bacillota
30-1(2) [BROC]
325
400
+
fMet
CAT
[ENA]
¡û
>W2310019324
BROC01000022
Bacillota
30-1(2) [BROC]
6710
6785
+
fMet
CAT
[ENA]
¡û
>W2310029968
BSUG01000046
Bacillota
Tetragenococcus halophilus subsp. flandriensis NBRC 114546 [BSUG]
567
642
+
fMet
CAT
[ENA]
¡û
>W2310029974
BSUG01000046
Bacillota
Tetragenococcus halophilus subsp. flandriensis NBRC 114546 [BSUG]
1159
1234
+
fMet
CAT
[ENA]
¡û
>W11185068
BACS01000405
Bacillota
Ligilactobacillus acidipiscis KCTC 13900 [BACS]
75
-1
-
Met
CAT
[ENA]
¡û
>C121000375
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2440644
2440569
-
Met
CAT
[Ensembl]
¡û
>C121000381
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2440052
2439977
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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