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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204541 (34 seq.)
>W1711687762
MSCV01000003
Gammaproteobacteria
Methylocaldum sp. 14B [MSCV]
3763
3687
-
Arg
ACG
[ENA]
¡û
>W1711744237
MUGL01000068
Gammaproteobacteria
Methylocaldum sp. SAD2 [MUGL]
280376
280452
+
Arg
ACG
[ENA]
¡û
>W131218633
ATXX01000022
Gammaproteobacteria
Methylocaldum szegediense O-12 [ATXX]
75038
75114
+
Arg
ACG
[ENA]
¡û
>W131233920
AUKJ01000017
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AUKJ]
315597
315673
+
Arg
ACG
[ENA]
¡û
>C013308
AE017282
Gammaproteobacteria
Methylococcus capsulatus str. Bath [AE017282]
2558113
2558037
-
Arg
ACG
[Ensembl]
¡û
>WENV180021239
FTEC01002187
[FTEC] metagenome; soil
2884
2808
-
Arg
ACG
[ENA]
¡û
>WENV180021336
FTEJ01000318
[FTEJ] metagenome; soil
944
868
-
Arg
ACG
[ENA]
¡û
>WENV180021501
FTEM01001172
[FTEM] metagenome; soil
157
233
+
Arg
ACG
[ENA]
¡û
>WENV180021537
FTEM01002393
[FTEM] metagenome; soil
21844
21768
-
Arg
ACG
[ENA]
¡û
>WENV180021790
FTFB01009424
[FTFB] metagenome; soil
3647
3571
-
Arg
ACG
[ENA]
¡û
>WENV180021875
FTFC01005193
[FTFC] metagenome; soil
1262
1186
-
Arg
ACG
[ENA]
¡û
>WENV180027396
FTIY01009178
[FTIY] metagenome; soil
1044
968
-
Arg
ACG
[ENA]
¡û
>WENV180031008
FTJO01000311
[FTJO] metagenome; soil
5693
5617
-
Arg
ACG
[ENA]
¡û
>WENV180031098
FTJO01004393
[FTJO] metagenome; soil
4295
4219
-
Arg
ACG
[ENA]
¡û
>WENV180031198
FTJO01008735
[FTJO] metagenome; soil
6173
6097
-
Arg
ACG
[ENA]
¡û
>WENV180031630
FTJQ01015087
[FTJQ] metagenome; soil
392
468
+
Arg
ACG
[ENA]
¡û
>WENV180034398
FTKQ01029001
[FTKQ] metagenome; soil
541
465
-
Arg
ACG
[ENA]
¡û
>W141041629
AMCE01000113
Gammaproteobacteria
Methylococcus capsulatus str. Texas = ATCC 19069 [AMCE]
3440
3364
-
Arg
ACG
[ENA]
¡û
>WENV180693764
OCZS011552265
[OCZS] soil metagenome; soil
117
193
+
Arg
ACG
[ENA]
¡û
>WENV170407339
CEUH01128276
[CEUH] marine metagenome genome assembly TARA_137_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
467
393
-
Arg
ACG
[ENA]
¡û
>WENV170570894
FLOH01000035
[FLOH] marine metagenome; water
91867
91943
+
Arg
ACG
[ENA]
¡û
>WENV170851514
MDTA01133330
[MDTA] marine metagenome; seawater
149
75
-
Arg
ACG
[ENA]
¡û
>C191000738
AP017928
Gammaproteobacteria
Methylocaldum marinum S8 [AP017928]
2989456
2989380
-
Arg
ACG
-
¡û
>W2010363245
CADDZF010000151
Gammaproteobacteria
Methylococcaceae bacterium [CADDZF]
3756
3832
+
Arg
ACG
[ENA]
¡û
>W2011558179
SEYW01000016
Gammaproteobacteria
Methylococcaceae bacterium FWC3 [SEYW]
99321
99397
+
Arg
ACG
[ENA]
¡û
>W2011651972
SNZL01000014
Gammaproteobacteria
Methylocaldum sp. 0917 [SNZL]
3858
3782
-
Arg
ACG
[ENA]
¡û
>W2011680964
SRSH01000002
Gammaproteobacteria
Methylotetracoccus sp. C50C1 [SRSH]
105728
105804
+
Arg
ACG
[ENA]
¡û
>W2110500068
JAFIBZ010000001
Gammaproteobacteria
Methylocaldum sp. RMAD-M [JAFIBZ]
460026
460102
+
Arg
ACG
[ENA]
¡û
>C211365239
CP079095
Gammaproteobacteria
Methylococcus sp. Mc7 [CP079095]
368831
368755
-
Arg
ACG
-
¡û
>C211365328
CP079097
Gammaproteobacteria
Methylococcus capsulatus KN2 [CP079097]
1250609
1250533
-
Arg
ACG
-
¡û
>C211365366
CP079098
Gammaproteobacteria
Methylococcus capsulatus IO1 [CP079098]
2803318
2803242
-
Arg
ACG
-
¡û
>C231379419
CP097161
Gammaproteobacteria
Methylococcus capsulatus MIR [CP097161]
2913126
2913202
+
Arg
ACG
-
¡û
>C231539706
CP110921
Gammaproteobacteria
Methylococcus sp. 16-5 [CP110921]
3543164
3543240
+
Arg
ACG
-
¡û
>C241389658
OX458333
Gammaproteobacteria
Methylocaldum szegediense [OX458333]
3466053
3466129
+
Arg
ACG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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