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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20456 (35 seq.)
>W1711005230
LQNG01000001
Bacillota
Levilactobacillus brevis [LQNG]
165814
165725
-
Ser
GCT
[ENA]
¡û
>W1711487604
MKGE01000001
Bacillota
Limosilactobacillus fermentum [MKGE]
12138
12049
-
Ser
GCT
[ENA]
¡û
>W1711903243
MZMW01000009
Bacillota
Levilactobacillus brevis [MZMW]
443
532
+
Ser
GCT
[ENA]
¡û
>C171051242
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
1540750
1540661
-
Ser
GCT
-
¡û
>W141146302
AWVK01000138
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
589
500
-
Ser
GCT
[ENA]
¡û
>WENV183182314
OLPK01000148
[OLPK] human gut metagenome; faeces
240
329
+
Ser
GCT
[ENA]
¢þ
>WENV183555366
OOBN01002242
[OOBN] human gut metagenome; human gut
12010
11921
-
Ser
GCT
[ENA]
¢þ
>WENV183606358
OODN01002827
[OODN] human gut metagenome; human gut
727
816
+
Ser
GCT
[ENA]
¢þ
>C191073981
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1016309
1016398
+
Ser
GCT
-
¡û
>C191074114
CP031182
Bacillota
Levilactobacillus brevis UCCLB95 [CP031182]
857740
857829
+
Ser
GCT
-
¡û
>C191074223
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1033361
1033450
+
Ser
GCT
-
¡û
>C191114432
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
1463189
1463278
+
Ser
GCT
-
¡û
>W1910230956
FPCL01000126
Bacillota
Levilactobacillus brevis [FPCL]
8539
8450
-
Ser
GCT
[ENA]
¡û
>W1910231146
FPCO01000141
Bacillota
Levilactobacillus brevis [FPCO]
8540
8451
-
Ser
GCT
[ENA]
¡û
>W1910231197
FPCQ01000132
Bacillota
Levilactobacillus brevis [FPCQ]
8583
8494
-
Ser
GCT
[ENA]
¡û
>W1910231252
FPCR01000133
Bacillota
Levilactobacillus brevis [FPCR]
8540
8451
-
Ser
GCT
[ENA]
¡û
>W1810595160
QGDR01000002
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
91920
91831
-
Ser
GCT
[ENA]
¡û
>W1810705806
QMJO01000063
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
1338
1427
+
Ser
GCT
[ENA]
¡û
>C151075317
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1734931
1734842
-
Ser
GCT
[Ensembl]
¡û
>W1510650154
CVQW01000002
Bacillota
Limosilactobacillus mucosae LM1 Marseille [CVQW]
860
949
+
Ser
GCT
[ENA]
¡û
>W1511352324
JROC01000011
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1425
1514
+
Ser
GCT
[ENA]
¡û
>W1511352372
JROC01000029
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1747
1836
+
Ser
GCT
[ENA]
¡û
>W1511388692
JSWI01000006
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
55771
55682
-
Ser
GCT
[ENA]
¡û
>W1511501817
JXCD01000050
Bacillota
Levilactobacillus brevis 15f [JXCD]
11994
11905
-
Ser
GCT
[ENA]
¡û
>W1511512298
JXUE01000015
Bacillota
Levilactobacillus brevis TMW 1.6 [JXUE]
1835901
1835990
+
Ser
GCT
[ENA]
¡û
>W1511580736
LARO01000089
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
352
263
-
Ser
GCT
[ENA]
¡û
>W1511591588
LBHR01000085
Bacillota
Levilactobacillus brevis 47f [LBHR]
1311
1400
+
Ser
GCT
[ENA]
¡û
>W121033328
AHIT01000015
Bacillota
Limosilactobacillus mucosae LM1 [AHIT]
647
736
+
Ser
GCT
[ENA]
¡û
>W1610035648
AZEQ01000083
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
199
110
-
Ser
GCT
[ENA]
¡û
>C131000181
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
926636
926725
+
Ser
GCT
[Ensembl]
¡û
>W1610855880
LQNG01000001
Bacillota
Levilactobacillus brevis [LQNG]
165814
165725
-
Ser
GCT
[ENA]
¡û
>W1710032687
AZEQ01000083
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
199
110
-
Ser
GCT
[ENA]
¡û
>W1710523876
FNIH01000007
Bacillota
Limosilactobacillus mucosae [FNIH]
892
981
+
Ser
GCT
[ENA]
¡û
>W1710566939
FOSI01000007
Bacillota
Limosilactobacillus mucosae [FOSI]
813
902
+
Ser
GCT
[ENA]
¡û
>W1710735911
LGIX01000061
Bacillota
Levilactobacillus brevis [LGIX]
8660
8571
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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