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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204618 (63 seq.)
>W1710882229
LMTR01000027
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
143587
143511
-
Arg
ACG
[ENA]
¡û
>W1711018769
LQXG01000001
Alphaproteobacteria
Maricaulis sp. W15 [LQXG]
383987
384063
+
Arg
ACG
[ENA]
¡û
>W1711256871
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
239495
239419
-
Arg
ACG
[ENA]
¡û
>W1711334306
MBQF01000007
Alphaproteobacteria
Stappia indica [MBQF]
82698
82774
+
Arg
ACG
[ENA]
¡û
>W131231540
AUIM01000012
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
86135
86211
+
Arg
ACG
[ENA]
¡û
>WENV180029209
FTJI01184637
[FTJI] metagenome; soil
364
440
+
Arg
ACG
[ENA]
¡û
>WENV180034717
FTKR01159021
[FTKR] metagenome; soil
364
440
+
Arg
ACG
[ENA]
¡û
>WENV180114671
OAPS01031035
[OAPS] marine metagenome; sea water
271
347
+
Arg
ACG
[ENA]
¡û
>WENV180209273
OBAK01056575
[OBAK] marine metagenome; ENVO.00002150
154
230
+
Arg
ACG
[ENA]
¡û
>WENV180209708
OBAL01015172
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
289
213
-
Arg
ACG
[ENA]
¡û
>WENV180358733
OBNQ01007640
[OBNQ] marine metagenome; ENVO 00002150
430
506
+
Arg
ACG
[ENA]
¡û
>WENV180362287
OBNW01096822
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
68
144
+
Arg
ACG
[ENA]
¡û
>WENV180641639
OCRN01019095
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
194
118
-
Arg
ACG
[ENA]
¡û
>WENV183623716
OOGA01047333
[OOGA] marine metagenome; sea ice
419
343
-
Arg
ACG
[ENA]
¡û
>WENV183630948
OOGU01012109
[OOGU] marine metagenome; sea ice
1468
1392
-
Arg
ACG
[ENA]
¡û
>WENV170134153
CENU01082914
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
442
518
+
Arg
ACG
[ENA]
¡û
>WENV170155327
CEOG01016466
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2745
2669
-
Arg
ACG
[ENA]
¡û
>WENV170468903
CEVF01070399
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
430
354
-
Arg
ACG
[ENA]
¡û
>WENV170652203
JRYH01000072
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
60136
60060
-
Arg
ACG
[ENA]
¡û
>WENV170705372
LLEQ01025669
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
132
56
-
Arg
ACG
[ENA]
¡û
>WENV170828324
MDSY01147354
[MDSY] marine metagenome; seawater
3262
3186
-
Arg
ACG
[ENA]
¡û
>WENV170839467
MDSZ01186053
[MDSZ] marine metagenome; seawater
7266
7342
+
Arg
ACG
[ENA]
¡û
>WENV170898722
MDTD01130216
[MDTD] marine metagenome; seawater
49688
49764
+
Arg
ACG
[ENA]
¡û
>WENV170925750
MDTG01089194
[MDTG] marine metagenome; seawater
53306
53382
+
Arg
ACG
[ENA]
¡û
>WENV170939290
MDTG01323511
[MDTG] marine metagenome; seawater
172487
172411
-
Arg
ACG
[ENA]
¡û
>W1910501805
FYAU01000020
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
32400
32476
+
Arg
ACG
[ENA]
¡û
>W1910501860
FYAV01000051
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
80743
80819
+
Arg
ACG
[ENA]
¡û
>W1910501898
FYAW01000014
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
91386
91310
-
Arg
ACG
[ENA]
¡û
>W1911494888
OBML01000009
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
91546
91622
+
Arg
ACG
[ENA]
¡û
>C151104272
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
897170
897246
+
Arg
ACG
[Ensembl]
¡û
>C151104318
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
897165
897241
+
Arg
ACG
[Ensembl]
¡û
>W2010421537
FYAU01000020
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
32400
32476
+
Arg
ACG
[ENA]
¡û
>W2010421592
FYAV01000051
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
80743
80819
+
Arg
ACG
[ENA]
¡û
>W2010421630
FYAW01000014
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
91386
91310
-
Arg
ACG
[ENA]
¡û
>W2010612769
JABRXF010000001
Alphaproteobacteria
Rhizobiales bacterium SY4-7 [JABRXF]
34286
34210
-
Arg
ACG
[ENA]
¡û
>W2010686540
JACFXV010000038
Alphaproteobacteria
Stappia sp. F7233 [JACFXV]
45667
45591
-
Arg
ACG
[ENA]
¡û
>W2010712046
JACHOB010000003
Alphaproteobacteria
Parvularcula dongshanensis DSM 102850 [JACHOB]
176428
176352
-
Arg
ACG
[ENA]
¡û
>W2010752293
JACMIA010000001
Alphaproteobacteria
Stappia sp. 28M-7 [JACMIA]
634539
634615
+
Arg
ACG
[ENA]
¡û
>W2011155792
OBML01000009
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
91546
91622
+
Arg
ACG
[ENA]
¡û
>W2011234969
PZPO01000001
Alphaproteobacteria
Hyphomicrobium sulfonivorans S1 [PZPO]
947603
947679
+
Arg
ACG
[ENA]
¡û
>W2011354603
RAPU01000002
Alphaproteobacteria
Stappia sp. ARW1T [RAPU]
82988
83064
+
Arg
ACG
[ENA]
¡û
>W2011373722
RBIM01000001
Alphaproteobacteria
Maricaulis maris DSM 4734 [RBIM]
274866
274942
+
Arg
ACG
[ENA]
¡û
>W2011637799
SMMA01000059
Alphaproteobacteria
Rhodobacteraceae bacterium RKSG542 [SMMA]
73631
73555
-
Arg
ACG
[ENA]
¡û
>W2011706668
SWKP01000010
Alphaproteobacteria
Maricaulis sp. LZ-16-1 [SWKP]
120156
120080
-
Arg
ACG
[ENA]
¡û
>W2012107043
VORA01000001
Alphaproteobacteria
Roseibium sp. SYSU M00256-3 [VORA]
236548
236624
+
Arg
ACG
[ENA]
¡û
>W2012205366
VXDB01000013
Alphaproteobacteria
Roseibium sediminis KCTC 52373 [VXDB]
31684
31608
-
Arg
ACG
[ENA]
¡û
>W2012205416
VXDC01000011
Alphaproteobacteria
Roseibium aquae CGMCC 1.12426 [VXDC]
117440
117516
+
Arg
ACG
[ENA]
¡û
>W2012445254
WUMV01000007
Alphaproteobacteria
Stappia sp. GBMRC 2046 [WUMV]
327645
327569
-
Arg
ACG
[ENA]
¡û
>W2110022144
BMFA01000010
Alphaproteobacteria
Roseibium aquae CGMCC 1.12426 [BMFA]
38567
38491
-
Arg
ACG
[ENA]
¡û
>W2110362368
JADOTT010000002
Alphaproteobacteria
Maricaulis parjimensis DSM 16078 [JADOTT]
341834
341910
+
Arg
ACG
[ENA]
¡û
>W2110408529
JAEFBX010000001
Alphaproteobacteria
Hyphomicrobium sulfonivorans S1 [JAEFBX]
169144
169068
-
Arg
ACG
[ENA]
¡û
>W2110429687
JAEMUJ010000160
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [JAEMUJ]
3741
3665
-
Arg
ACG
[ENA]
¡û
>W2110429714
JAEMUK010000002
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JAEMUK]
286579
286655
+
Arg
ACG
[ENA]
¡û
>W2110511569
JAFLNC010000001
Alphaproteobacteria
Sneathiella sp. CAU 1612 [JAFLNC]
365079
365003
-
Arg
ACG
[ENA]
¡û
>W10112698
ADFF01000006
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
134690
134766
+
Arg
ACG
[ENA]
¡û
>C241114073
CP046908
Alphaproteobacteria
Stappia indica PHM037 [CP046908]
3681776
3681852
+
Arg
ACG
-
¡û
>C241261773
CP125860
Alphaproteobacteria
Rhodomicrobium lacus DSM 166 [CP125860]
2871412
2871336
-
Arg
ACG
-
¡û
>W11115925
ADFF01000006
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
134690
134766
+
Arg
ACG
[ENA]
¡û
>C11119029
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2245668
2245592
-
Arg
ACG
[Ensembl]
¡û
>W1610744155
LMTR01000027
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
143587
143511
-
Arg
ACG
[ENA]
¡û
>W1611019896
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
239495
239419
-
Arg
ACG
[ENA]
¡û
>W1611066273
MBQF01000007
Alphaproteobacteria
Stappia indica [MBQF]
82698
82774
+
Arg
ACG
[ENA]
¡û
>W1710524940
FNJC01000005
Alphaproteobacteria
Filomicrobium insigne [FNJC]
216191
216267
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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