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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204855 (35 seq.)
>W1710860781
LMDD01000007
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
209237
209321
+
Leu
GAG
[ENA]
¡û
>W1710860851
LMDF01000001
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
210527
210611
+
Leu
GAG
[ENA]
¡û
>W1711385899
MEEU01000002
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
19125
19209
+
Leu
GAG
[ENA]
¡û
>WENV180015750
FSTD01000147
[FSTD] metagenome; soil
2224
2140
-
Leu
GAG
[ENA]
¡û
>WENV180033763
FTKL01114130
[FTKL] metagenome; soil
32
116
+
Leu
GAG
[ENA]
¡û
>W141136713
AWGC01000006
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
210859
210943
+
Leu
GAG
[ENA]
¡û
>W141136757
AWGD01000008
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
187564
187648
+
Leu
GAG
[ENA]
¡û
>WENV183737942
PJUD01054946
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
688
604
-
Leu
GAG
[ENA]
¡û
>WENV183740180
PJUF01000638
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
15093
15177
+
Leu
GAG
[ENA]
¡û
>WENV170002500
AGTN01051492
[AGTN] bioreactor metagenome; poplar biomass
197
281
+
Leu
GAG
[ENA]
¡û
>WENV170565496
FJVW01000120
[FJVW] metagenome; soil
1434
1350
-
Leu
GAG
[ENA]
¡û
>WENV170565511
FJVW01000349
[FJVW] metagenome; soil
427
343
-
Leu
GAG
[ENA]
¡û
>C181160488
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
3090548
3090464
-
Leu
GAG
-
¡û
>C191130653
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
1540453
1540537
+
Leu
GAG
-
¡û
>W1810069309
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
1625751
1625835
+
Leu
GAG
[ENA]
¡û
>W1810073581
PEGH01000019
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
44554
44470
-
Leu
GAG
[ENA]
¡û
>W1810503490
QBKE01000001
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
101589
101505
-
Leu
GAG
[ENA]
¡û
>W2010497711
JAALFG010000002
Alphaproteobacteria
Devosia sp. H239 [JAALFG]
258740
258656
-
Leu
GAG
[ENA]
¡û
>W2010586324
JABAOL010000001
Alphaproteobacteria
Devosia sp. 919 [JABAOL]
2056419
2056503
+
Leu
GAG
[ENA]
¡û
>W2010586364
JABAOM010000001
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
929514
929598
+
Leu
GAG
[ENA]
¡û
>W2010726338
JACIEW010000010
Alphaproteobacteria
Devosia subaequoris DSM 23447 [JACIEW]
21975
21891
-
Leu
GAG
[ENA]
¡û
>W2011486020
RRYI01000010
Alphaproteobacteria
Caulobacter sp. 602-1 [RRYI]
164384
164300
-
Leu
GAG
[ENA]
¡û
>W2011687985
SSBC01000010
Alphaproteobacteria
Asticcacaulis sp. 3.1105 [SSBC]
796497
796413
-
Leu
GAG
[ENA]
¡û
>W10109879
ADBN01000002
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
232566
232650
+
Leu
GAG
[ENA]
¡û
>C231201035
CP084910
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
1976604
1976520
-
Leu
GAG
-
¡û
>C231365726
CP096040
Alphaproteobacteria
Caulobacter segnis RL271 [CP096040]
3650811
3650727
-
Leu
GAG
-
¡û
>W2310023939
BSNG01000001
Alphaproteobacteria
Devosia yakushimensis NBRC 103855 [BSNG]
1312800
1312884
+
Leu
GAG
[ENA]
¡û
>W11112316
ADBN01000002
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
232566
232650
+
Leu
GAG
[ENA]
¡û
>W1511432272
JUGJ01000015
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
207792
207876
+
Leu
GAG
[ENA]
¡û
>W11123383
ADUH01000229
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
562
646
+
Leu
GAG
[ENA]
¡û
>W1511568631
LAJF01000137
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
107948
108032
+
Leu
GAG
[ENA]
¡û
>C121001861
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
3090682
3090598
-
Leu
GAG
[Ensembl]
¡û
>W1610723127
LMDD01000007
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
209237
209321
+
Leu
GAG
[ENA]
¡û
>W1610723197
LMDF01000001
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
210527
210611
+
Leu
GAG
[ENA]
¡û
>W1710583798
FQVC01000002
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
198176
198260
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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