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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20500 (33 seq.)
>W1710945164
LORG01000004
Gammaproteobacteria
Marinobacter sp. YWL01 [LORG]
380058
379968
-
Ser
GGA
[ENA]
¡û
>W1711126381
LUOM01000181
Gammaproteobacteria
Marinobacter sp. REDSEA-S27_B10 [LUOM]
2941
2851
-
Ser
GGA
[ENA]
¡û
>W1711221583
LXRF01000019
Gammaproteobacteria
Marinobacter adhaerens [LXRF]
118231
118321
+
Ser
GGA
[ENA]
¡û
>W1711229576
LXYO01000010
Gammaproteobacteria
Marinobacter sp. EhC06 [LXYO]
41896
41806
-
Ser
GGA
[ENA]
¡û
>W1711333317
MBPP01000001
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
440830
440740
-
Ser
GGA
[ENA]
¡û
>W131166734
ARCR01000062
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
11097
11007
-
Ser
GGA
[ENA]
¡û
>WENV182545933
OJBO01000130
[OJBO] seawater metagenome; Sea water
36638
36728
+
Ser
GGA
[ENA]
¢þ
>WENV182550766
OJCB01000030
[OJCB] seawater metagenome; Sea water
45956
46046
+
Ser
GGA
[ENA]
¢þ
>WENV182581076
OJGX01000048
[OJGX] seawater metagenome; Sea water
17137
17047
-
Ser
GGA
[ENA]
¢þ
>WENV182582044
OJGZ01006488
[OJGZ] seawater metagenome; Sea water
290
380
+
Ser
GGA
[ENA]
¢þ
>WENV182591901
OJIO01013798
[OJIO] seawater metagenome; Sea water
1327
1237
-
Ser
GGA
[ENA]
¢þ
>WENV183062119
OLID01000074
[OLID] seawater metagenome; Sea water
24075
23985
-
Ser
GGA
[ENA]
¢þ
>WENV170201125
CEPP01078524
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4251
4341
+
Ser
GGA
[ENA]
¢þ
>WENV170340967
CETC01058275
[CETC] marine metagenome genome assembly TARA_122_DCM_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
827
917
+
Ser
GGA
[ENA]
¢þ
>WENV170381499
CETW01170350
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1192
1282
+
Ser
GGA
[ENA]
¢þ
>WENV170740110
LULR01001117
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
2941
2851
-
Ser
GGA
[ENA]
¢þ
>WENV170744310
LULX01000211
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
5654
5744
+
Ser
GGA
[ENA]
¢þ
>WENV170748441
LUMD01024070
[LUMD] marine metagenome; Red Sea water column Station 34 - depth 258m
525
435
-
Ser
GGA
[ENA]
¢þ
>C191120180
CP034142
Gammaproteobacteria
Marinobacter sp. NP-4[2019] [CP034142]
2077482
2077572
+
Ser
GGA
-
¡û
>W1910000673
AOML01000333
Gammaproteobacteria
Marinobacter salsuginis SD-14B [AOML]
68926
68836
-
Ser
GGA
[ENA]
¡û
>W1810173525
PJNC01000001
Gammaproteobacteria
Marinobacter sp. LV10R510-8 [PJNC]
3604312
3604222
-
Ser
GGA
[ENA]
¡û
>W1810276889
PSSW01000007
Gammaproteobacteria
Marinobacter flavimaris LMG 23834 [PSSW]
112635
112545
-
Ser
GGA
[ENA]
¡û
>W1810463463
PZZO01000005
Gammaproteobacteria
Marinobacter sp. PT19DW [PZZO]
122294
122384
+
Ser
GGA
[ENA]
¡û
>W1810592251
QFWX01000003
Gammaproteobacteria
Marinobacter vulgaris F01 [QFWX]
324100
324190
+
Ser
GGA
[ENA]
¡û
>W1810786864
QRDH01000007
Gammaproteobacteria
Marinobacter flavimaris KCTC 12185 [QRDH]
119795
119885
+
Ser
GGA
[ENA]
¡û
>C151017533
CP007151
Gammaproteobacteria
Marinobacter similis A3d10 [CP007151]
570884
570794
-
Ser
GGA
[Ensembl]
¡û
>C151083234
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
1851681
1851771
+
Ser
GGA
[Ensembl]
¡û
>C151087528
CP011929
Gammaproteobacteria
Marinobacter sp. CP1 [CP011929]
4077972
4078062
+
Ser
GGA
-
¡û
>C11113772
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
1636739
1636829
+
Ser
GGA
[Ensembl]
¡û
>W1610801123
LORG01000004
Gammaproteobacteria
Marinobacter sp. YWL01 [LORG]
380058
379968
-
Ser
GGA
[ENA]
¡û
>W1610937314
LUOM01000181
Gammaproteobacteria
Marinobacter sp. REDSEA-S27_B10 [LUOM]
2941
2851
-
Ser
GGA
[ENA]
¡û
>W1611013446
LXYO01000010
Gammaproteobacteria
Marinobacter sp. EhC06 [LXYO]
41896
41806
-
Ser
GGA
[ENA]
¡û
>W1710590009
FRAQ01000002
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
327508
327598
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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