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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20508 (30 seq.)
>W1710867090
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
257540
257450
-
Ser
GGA
[ENA]
¡û
>W1711082064
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
977230
977320
+
Ser
GGA
[ENA]
¡û
>W1711430712
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
371978
372068
+
Ser
GGA
[ENA]
¡û
>W1711765131
MUXB01000131
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
522481
522571
+
Ser
GGA
[ENA]
¡û
>W1712110274
NJGU01000006
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
62031
61941
-
Ser
GGA
[ENA]
¡û
>W1712110330
NJGV01000022
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
35911
35821
-
Ser
GGA
[ENA]
¡û
>C171021200
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
1768989
1769079
+
Ser
GGA
-
¡û
>C171085371
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
5315403
5315493
+
Ser
GGA
-
¡û
>W131046035
AMSA01000028
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
29069
29159
+
Ser
GGA
[ENA]
¡û
>W131046080
AMSB01000014
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
92178
92268
+
Ser
GGA
[ENA]
¡û
>W141003813
AEEC02000006
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
134135
134225
+
Ser
GGA
[ENA]
¡û
>WENV181834774
OGVG01000665
[OGVG] freshwater metagenome; freshwater
1324
1414
+
Ser
GGA
[ENA]
¢þ
>WENV183727899
PJTP01004140
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
1194
1284
+
Ser
GGA
[ENA]
¢þ
>WENV183731321
PJTS01038181
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
295
385
+
Ser
GGA
[ENA]
¢þ
>WENV183735078
PJUA01000786
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1216
1306
+
Ser
GGA
[ENA]
¢þ
>WENV183735864
PJUB01006338
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
137
47
-
Ser
GGA
[ENA]
¢þ
>WENV183743613
PJUJ01010595
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
424
514
+
Ser
GGA
[ENA]
¢þ
>WENV183744348
PJUK01009649
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
252
162
-
Ser
GGA
[ENA]
¢þ
>C191029331
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
1713412
1713502
+
Ser
GGA
-
¡û
>C191124228
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
1642519
1642609
+
Ser
GGA
-
¡û
>W1910577862
JUGD01000015
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
159608
159698
+
Ser
GGA
[ENA]
¡û
>W1910578289
JWJC01000005
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
396475
396565
+
Ser
GGA
[ENA]
¡û
>W1810194023
PKOI01000001
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
526725
526815
+
Ser
GGA
[ENA]
¡û
>C151087563
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
1781504
1781594
+
Ser
GGA
[Ensembl]
¡û
>C10107799
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
1781783
1781873
+
Ser
GGA
[Ensembl]
¡û
>C161060436
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
1641229
1641319
+
Ser
GGA
[Ensembl]
¡û
>W1610071836
BCUJ01000006
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
181973
182063
+
Ser
GGA
[ENA]
¡û
>W121068686
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
291876
291966
+
Ser
GGA
[ENA]
¡û
>W1610729436
LMHZ01000023
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
257540
257450
-
Ser
GGA
[ENA]
¡û
>W1710069038
BCUJ01000006
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
181973
182063
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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