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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205309 (47 seq.)
>w019215
AAUA01000004
Cyanobacteriota
Synechococcus sp. RS9916 [AAUA]
116511
116597
+
Leu
TAG
[ENA]
¡û
>w013572
AANO01000004
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
149918
149834
-
Leu
TAG
[ENA]
¡û
>WENV180050624
MPLU02155490
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
1571
1490
-
Leu
TAG
[ENA]
¡û
>WENV180063622
MPLX02365154
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
3129
3048
-
Leu
TAG
[ENA]
¡û
>WENV180081101
MPMC02084968
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
739
820
+
Leu
TAG
[ENA]
¡û
>WENV180084634
MPMD02220113
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
324
405
+
Leu
TAG
[ENA]
¡û
>WENV180088047
MPMF02009393
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
9060
9141
+
Leu
TAG
[ENA]
¡û
>WENV180114506
OAPS01013420
[OAPS] marine metagenome; sea water
555
640
+
Leu
TAG
[ENA]
¡û
>WENV180360348
OBNT01063628
[OBNT] marine metagenome; Sea Water
398
313
-
Leu
TAG
[ENA]
¡û
>WENV180369019
OBOG01016322
[OBOG] marine metagenome; seawater
1
84
+
Leu
TAG
[ENA]
¡û
>WENV180590704
OCOU01003114
[OCOU] marine metagenome; Water
728
643
-
Leu
TAG
[ENA]
¡û
>WENV181122416
OEFM01010447
[OEFM] marine metagenome; ENVO:00000569 for seawater
397
312
-
Leu
TAG
[ENA]
¡û
>WENV183810623
PVBE011501225
[PVBE] marine metagenome; water
193
274
+
Leu
TAG
[ENA]
¡û
>WENV170113565
CENF01081901
[CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
391
474
+
Leu
TAG
[ENA]
¡û
>WENV170134023
CENU01071901
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
879
797
-
Leu
TAG
[ENA]
¡û
>WENV170212218
CEPW01160856
[CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
411
330
-
Leu
TAG
[ENA]
¡û
>WENV170504876
CEVW01010361
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
915
832
-
Leu
TAG
[ENA]
¡û
>WENV170792892
MDSV01106931
[MDSV] marine metagenome; seawater
355
438
+
Leu
TAG
[ENA]
¡û
>WENV170802710
MDSW01018333
[MDSW] marine metagenome; seawater
382
464
+
Leu
TAG
[ENA]
¡û
>WENV170831614
MDSZ01047216
[MDSZ] marine metagenome; seawater
2660
2579
-
Leu
TAG
[ENA]
¡û
>WENV170856450
MDTA01224061
[MDTA] marine metagenome; seawater
3925
3844
-
Leu
TAG
[ENA]
¡û
>W1911176875
NQKW01000007
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
98194
98113
-
Leu
TAG
[ENA]
¡û
>W1911176916
NQKX01000008
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
175852
175935
+
Leu
TAG
[ENA]
¡û
>W1810528536
QCTE01000007
Cyanobacteriota
Synechococcus sp. AG-673-A03 [QCTE]
21857
21772
-
Leu
TAG
[ENA]
¡û
>W2011032362
NQKW01000007
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
98194
98113
-
Leu
TAG
[ENA]
¡û
>W2011032403
NQKX01000008
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
175852
175935
+
Leu
TAG
[ENA]
¡û
>W2011542177
SDBW01000001
Cyanobacteriota
Synechococcus sp. HB1133 [SDBW]
18207
18124
-
Leu
TAG
[ENA]
¡û
>W2011800363
UCNN01000012
Cyanobacteriota
Synechococcus sp. P1 [UCNN]
75372
75455
+
Leu
TAG
[ENA]
¡û
>W2011800726
UCNV01000009
Cyanobacteriota
Synechococcus sp. P1 [UCNV]
25875
25792
-
Leu
TAG
[ENA]
¡û
>W2011800765
UCNW01000009
Cyanobacteriota
Synechococcus sp. P1 [UCNW]
618992
619075
+
Leu
TAG
[ENA]
¡û
>W2011800912
UCOB01000006
Cyanobacteriota
Synechococcus sp. P1 [UCOB]
75010
75093
+
Leu
TAG
[ENA]
¡û
>W2012098956
VNWP01000011
Cyanobacteriota
Synechococcus sp. BSA11S [VNWP]
63824
63905
+
Leu
TAG
[ENA]
¡û
>W2012100655
VOBS01000011
Cyanobacteriota
Synechococcus sp. BSF8S [VOBS]
63824
63905
+
Leu
TAG
[ENA]
¡û
>C211073012
CP047951
Cyanobacteriota
Synechococcus sp. PROS-U-1 [CP047951]
358970
359053
+
Leu
TAG
-
¡û
>C211118765
CP059060
Cyanobacteriota
Synechococcus sp. LTW-R [CP059060]
1551299
1551214
-
Leu
TAG
-
¡û
>C211195324
CP064908
Cyanobacteriota
Synechococcus sp. CBW1107 [CP064908]
1124488
1124407
-
Leu
TAG
-
¡û
>C211324851
CP073761
Cyanobacteriota
Cyanobium sp. M30B3 [CP073761]
2813870
2813787
-
Leu
TAG
-
¡û
>C231285904
CP090898
Cyanobacteriota
Synechococcus sp. NB0720_010 [CP090898]
1279653
1279568
-
Leu
TAG
-
¡û
>C231365444
CP096032
Cyanobacteriota
Synechococcus sp. A10-1-5-1 [CP096032]
1263106
1263021
-
Leu
TAG
-
¡û
>W2110777972
VTKW01000009
Cyanobacteriota
Synechococcus sp. MU1650 [VTKW]
84302
84385
+
Leu
TAG
[ENA]
¡û
>W2110778086
VTLA01000003
Cyanobacteriota
Synechococcus sp. MU1625 [VTLA]
188378
188461
+
Leu
TAG
[ENA]
¡û
>W2110778171
VTLC01000004
Cyanobacteriota
Synechococcus sp. MU1611 [VTLC]
18238
18155
-
Leu
TAG
[ENA]
¡û
>W2110778198
VTLD01000005
Cyanobacteriota
Synechococcus sp. PH41509 [VTLD]
18207
18124
-
Leu
TAG
[ENA]
¡û
>W2110778248
VTLE01000006
Cyanobacteriota
Synechococcus sp. HBA1120 [VTLE]
590479
590562
+
Leu
TAG
[ENA]
¡û
>W2110778271
VTLF01000001
Cyanobacteriota
Synechococcus sp. HB1133 [VTLF]
18207
18124
-
Leu
TAG
[ENA]
¡û
>W10120573
ADXM01000022
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
151448
151533
+
Leu
TAG
[ENA]
¡û
>W11127317
ADXM01000022
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
151448
151533
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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