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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205559 (130 seq.)
>W1711069191
LSFL01000042
Bacteroidota
Polaribacter reichenbachii [LSFL]
354069
353995
-
Arg
TCT
[ENA]
¡û
>W1711167288
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61552
61626
+
Arg
TCT
[ENA]
¡û
>W1711359993
MDJD01000034
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
203650
203726
+
Arg
TCT
[ENA]
¡û
>W1711621231
MPCX01000001
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
40900
40974
+
Arg
TCT
[ENA]
¡û
>W1712097638
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
556766
556692
-
Arg
TCT
[ENA]
¡û
>W131066936
ANPJ01000010
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
235782
235856
+
Arg
TCT
[ENA]
¡û
>C171094197
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2545787
2545861
+
Arg
TCT
-
¡û
>C171098453
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
261653
261727
+
Arg
TCT
-
¡û
>w013018
AAMZ01000001
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
137455
137531
+
Arg
TCT
[ENA]
¡û
>WENV180101614
OAOV01028561
[OAOV] marine metagenome; ENVO:00002010
108
182
+
Arg
TCT
[ENA]
¡û
>WENV180102846
OAOZ01030506
[OAOZ] marine metagenome; ENVO:00002010
316
242
-
Arg
TCT
[ENA]
¡û
>WENV180214602
OBAP01018026
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
217
143
-
Arg
TCT
[ENA]
¡û
>WENV180356584
OBNL01000016
[OBNL] marine metagenome; ENVO:00002010
932
858
-
Arg
TCT
[ENA]
¡û
>WENV180383281
OBOU01024638
[OBOU] marine metagenome; ENV:00002010
417
343
-
Arg
TCT
[ENA]
¡û
>WENV180397513
OBPY01016231
[OBPY] marine metagenome; Mesotrophic water
375
449
+
Arg
TCT
[ENA]
¡û
>WENV180399739
OBQO01023915
[OBQO] marine metagenome; ENVO:00002010
295
369
+
Arg
TCT
[ENA]
¡û
>W08004301
ABHI01000003
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
394350
394274
-
Arg
TCT
[ENA]
¡û
>WENV181319269
OFKD01002816
[OFKD] marine metagenome; seawater
390
464
+
Arg
TCT
[ENA]
¡û
>WENV181321343
OFKL01011346
[OFKL] marine metagenome; seawater
82
8
-
Arg
TCT
[ENA]
¡û
>WENV181325979
OFLJ01060460
[OFLJ] seawater metagenome; seawater
134
60
-
Arg
TCT
[ENA]
¡û
>WENV181391472
OFRT01010434
[OFRT] seawater metagenome; seawater
201
127
-
Arg
TCT
[ENA]
¡û
>W141231619
BAUG01000014
Bacteroidota
Tenacibaculum maritimum NBRC 15946 [BAUG]
24639
24565
-
Arg
TCT
[ENA]
¡û
>WENV182558269
OJDL01028033
[OJDL] seawater metagenome; Sea water
447
373
-
Arg
TCT
[ENA]
¡û
>WENV182558931
OJDN01017247
[OJDN] seawater metagenome; Sea water
84
158
+
Arg
TCT
[ENA]
¡û
>WENV182567412
OJEO01000645
[OJEO] seawater metagenome; Sea water
11241
11315
+
Arg
TCT
[ENA]
¡û
>WENV182571679
OJFK01004152
[OJFK] seawater metagenome; Sea water
2574
2500
-
Arg
TCT
[ENA]
¡û
>WENV182574135
OJFR01000102
[OJFR] seawater metagenome; Sea water
30054
30128
+
Arg
TCT
[ENA]
¡û
>WENV182578657
OJGP01000020
[OJGP] seawater metagenome; Sea water
1779
1705
-
Arg
TCT
[ENA]
¡û
>WENV182581352
OJGX01003616
[OJGX] seawater metagenome; Sea water
174
100
-
Arg
TCT
[ENA]
¡û
>WENV182590766
OJIK01000322
[OJIK] seawater metagenome; Sea water
12669
12743
+
Arg
TCT
[ENA]
¡û
>WENV182593067
OJIS01031141
[OJIS] seawater metagenome; Sea water
631
705
+
Arg
TCT
[ENA]
¡û
>WENV182594010
OJIV01000048
[OJIV] seawater metagenome; Sea water
75
1
-
Arg
TCT
[ENA]
¡û
>WENV183056108
OLHI01000091
[OLHI] seawater metagenome; Sea water
24944
25018
+
Arg
TCT
[ENA]
¡û
>WENV183056756
OLHJ01011394
[OLHJ] seawater metagenome; Sea water
1417
1343
-
Arg
TCT
[ENA]
¡û
>WENV183058874
OLHR01021452
[OLHR] seawater metagenome; Sea water
142
68
-
Arg
TCT
[ENA]
¡û
>WENV183061293
OLHZ01002933
[OLHZ] seawater metagenome; Sea water
834
760
-
Arg
TCT
[ENA]
¡û
>WENV183061357
OLHZ01004600
[OLHZ] seawater metagenome; Sea water
1724
1798
+
Arg
TCT
[ENA]
¡û
>WENV183617706
OOEG01054351
[OOEG] marine metagenome; sea ice
310
384
+
Arg
TCT
[ENA]
¡û
>WENV183619853
OOFQ01063210
[OOFQ] marine metagenome; seawater
134
60
-
Arg
TCT
[ENA]
¡û
>WENV183620417
OOFR01054084
[OOFR] marine metagenome; seawater
363
289
-
Arg
TCT
[ENA]
¡û
>WENV183620438
OOFR01060003
[OOFR] marine metagenome; seawater
382
308
-
Arg
TCT
[ENA]
¡û
>WENV183622830
OOFW01018606
[OOFW] marine metagenome; sea ice
24
98
+
Arg
TCT
[ENA]
¡û
>WENV183625178
OOGF01002831
[OOGF] marine metagenome; seawater
1403
1477
+
Arg
TCT
[ENA]
¡û
>WENV183628375
OOGN01025748
[OOGN] marine metagenome; sea ice
287
361
+
Arg
TCT
[ENA]
¡û
>WENV170327030
CESU01038996
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
520
594
+
Arg
TCT
[ENA]
¡û
>WENV170567449
FLMP01000592
[FLMP] seawater metagenome; seawater
11021
11095
+
Arg
TCT
[ENA]
¡û
>WENV170569625
FLMP01252782
[FLMP] seawater metagenome; seawater
540
466
-
Arg
TCT
[ENA]
¡û
>WENV170569799
FLMP01306271
[FLMP] seawater metagenome; seawater
223
147
-
Arg
TCT
[ENA]
¡û
>WENV170950137
MEHZ011479675
[MEHZ] marine metagenome; marine surface water
1
75
+
Arg
TCT
[ENA]
¡û
>WENV170951401
MEHZ011551213
[MEHZ] marine metagenome; marine surface water
6031
6105
+
Arg
TCT
[ENA]
¡û
>C181122740
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
485449
485375
-
Arg
TCT
-
¡û
>C181219860
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2350736
2350662
-
Arg
TCT
-
¡û
>W141563343
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
406838
406762
-
Arg
TCT
[ENA]
¡û
>W1910547679
FZNY01000010
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
133735
133809
+
Arg
TCT
[ENA]
¡û
>W1910695575
MDVN01000024
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
563083
563009
-
Arg
TCT
[ENA]
¡û
>W1910796534
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
729579
729653
+
Arg
TCT
[ENA]
¡û
>W1810173131
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
2117009
2116935
-
Arg
TCT
[ENA]
¡û
>W1810223455
POTB01000001
Bacteroidota
Hanstruepera ponticola L53 [POTB]
13226
13152
-
Arg
TCT
[ENA]
¡û
>W1810588123
QFRI01000003
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
59564
59490
-
Arg
TCT
[ENA]
¡û
>W1810693699
QLLO01000003
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
74705
74631
-
Arg
TCT
[ENA]
¡û
>W1810724871
QOCC01000013
Bacteroidota
Tenacibaculum sp. E3R01 [QOCC]
43613
43687
+
Arg
TCT
[ENA]
¡û
>W1810756027
QPEJ01000016
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
39727
39653
-
Arg
TCT
[ENA]
¡û
>C151018430
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
2821151
2821077
-
Arg
TCT
[Ensembl]
¡û
>C151048601
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
592607
592531
-
Arg
TCT
[Ensembl]
¡û
>W2010317716
CACSGE010000002
Bacteroidota
Tenacibaculum maritimum CVI1001048 [CACSGE]
100560
100634
+
Arg
TCT
[ENA]
¡û
>W2010317766
CACSGF010000003
Bacteroidota
Tenacibaculum maritimum Aq16-85 [CACSGF]
25151
25077
-
Arg
TCT
[ENA]
¡û
>W2010317929
CACSGK010000164
Bacteroidota
Tenacibaculum maritimum DPIF 89/3001-6.2 [CACSGK]
18004
18078
+
Arg
TCT
[ENA]
¡û
>W2010317950
CACSGM010000009
Bacteroidota
Tenacibaculum maritimum UCD SB2 [CACSGM]
24892
24818
-
Arg
TCT
[ENA]
¡û
>W2010318008
CACSGN010000033
Bacteroidota
Tenacibaculum maritimum P1-39 [CACSGN]
48289
48363
+
Arg
TCT
[ENA]
¡û
>W2010318032
CACSGO010000007
Bacteroidota
Tenacibaculum maritimum P4-45 [CACSGO]
100698
100772
+
Arg
TCT
[ENA]
¡û
>W2010318110
CACSGP010000056
Bacteroidota
Tenacibaculum maritimum P2-48 [CACSGP]
107376
107450
+
Arg
TCT
[ENA]
¡û
>W2010318219
CACSGS010000063
Bacteroidota
Tenacibaculum maritimum USC SP9.1 [CACSGS]
19894
19968
+
Arg
TCT
[ENA]
¡û
>W2010318318
CACSGW010000008
Bacteroidota
Tenacibaculum maritimum FC [CACSGW]
73844
73918
+
Arg
TCT
[ENA]
¡û
>W2010318357
CACSGX010000018
Bacteroidota
Tenacibaculum maritimum JIP 32/91-4 [CACSGX]
48022
48096
+
Arg
TCT
[ENA]
¡û
>W2010318399
CACSGZ010000002
Bacteroidota
Tenacibaculum maritimum NCIMB 2158 [CACSGZ]
44428
44354
-
Arg
TCT
[ENA]
¡û
>W2010318539
CACSHC010000012
Bacteroidota
Tenacibaculum maritimum 902 [CACSHC]
58121
58195
+
Arg
TCT
[ENA]
¡û
>W2010318582
CACSHD010000018
Bacteroidota
Tenacibaculum maritimum JIP 46/00 [CACSHD]
24846
24772
-
Arg
TCT
[ENA]
¡û
>W2010318623
CACSHF010000001
Bacteroidota
FS08(1) [CACSHF]
25159
25085
-
Arg
TCT
[ENA]
¡û
>W2010429440
FZNY01000010
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
133735
133809
+
Arg
TCT
[ENA]
¡û
>W2010829168
MDVN01000024
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
563083
563009
-
Arg
TCT
[ENA]
¡û
>W2010904169
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
729579
729653
+
Arg
TCT
[ENA]
¡û
>W2011665419
SORL01000007
Bacteroidota
Algibacter wandonensis CECT 8301 [SORL]
143601
143675
+
Arg
TCT
[ENA]
¡û
>W2011681115
SRSO01000025
Bacteroidota
Flavivirga sp. RZ03 [SRSO]
74687
74613
-
Arg
TCT
[ENA]
¡û
>W2011961847
VANR01000001
Bacteroidota
Polaribacter sp. DBTF-3 [VANR]
62536
62462
-
Arg
TCT
[ENA]
¡û
>W2012042696
VISL01000001
Bacteroidota
Dokdonia sp. Hel1_53 [VISL]
921975
921901
-
Arg
TCT
[ENA]
¡û
>W2012102703
VOGY01000002
Bacteroidota
Algibacter sp. H164 [VOGY]
73453
73379
-
Arg
TCT
[ENA]
¡û
>W2012107405
VORS01000012
Bacteroidota
Polaribacter sp. IC073 [VORS]
38384
38458
+
Arg
TCT
[ENA]
¡û
>W2012125220
VRMJ01000041
Bacteroidota
Polaribacter sp. ANORD1 [VRMJ]
378205
378279
+
Arg
TCT
[ENA]
¡û
>W2012205557
VXDE01000001
Bacteroidota
Algibacter wandonensis WS-MY22 [VXDE]
934342
934268
-
Arg
TCT
[ENA]
¡û
>W2110021594
BMEP01000010
Bacteroidota
Dokdonia pacifica CGMCC 1.12184 [BMEP]
6595
6521
-
Arg
TCT
[ENA]
¡û
>W2110028263
BMJW01000001
Bacteroidota
Polaribacter pacificus CGMCC 1.15763 [BMJW]
62930
62856
-
Arg
TCT
[ENA]
¡û
>W2110046594
BMWO01000002
Bacteroidota
Ulvibacter litoralis KCTC 12104 [BMWO]
11118
11044
-
Arg
TCT
[ENA]
¡û
>W2110047106
BMWZ01000013
Bacteroidota
Algibacter mikhailovii KCTC 12710 [BMWZ]
18644
18570
-
Arg
TCT
[ENA]
¡û
>W2110240089
JACNMJ010000002
Bacteroidota
Flavihalobacter algicola Dm15 [JACNMJ]
88766
88840
+
Arg
TCT
[ENA]
¡û
>W2110242777
JACOME010000002
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOME]
459086
459160
+
Arg
TCT
[ENA]
¡û
>W2110246517
JACOQD010000002
Bacteroidota
Winogradskyella echinorum KCTC 22026 [JACOQD]
459086
459160
+
Arg
TCT
[ENA]
¡û
>W2110612603
JAHKQL010000002
Bacteroidota
Polaribacter vadi B2M17 [JAHKQL]
176108
176034
-
Arg
TCT
[ENA]
¡û
>C211118072
CP058984
Bacteroidota
Polaribacter sp. R2A056_3_33 [CP058984]
2878269
2878343
+
Arg
TCT
-
¡û
>C211118168
CP058986
Bacteroidota
Polaribacter sp. HaHaR_3_91 [CP058986]
1450470
1450544
+
Arg
TCT
-
¡û
>C211136747
CP060695
Bacteroidota
Polaribacter sp. L12M9 [CP060695]
499836
499910
+
Arg
TCT
-
¡û
>C211153646
CP061813
Bacteroidota
Polaribacter haliotis KCTC 52418 [CP061813]
3492397
3492471
+
Arg
TCT
-
¡û
>C211295978
CP071795
Bacteroidota
Polaribacter sp. G4M1 [CP071795]
1026708
1026634
-
Arg
TCT
-
¡û
>C211296939
CP071869
Bacteroidota
Polaribacter sp. SM13 [CP071869]
3718479
3718553
+
Arg
TCT
-
¡û
>C231470613
CP103460
Bacteroidota
Polaribacter undariae KCTC 42175 [CP103460]
1635444
1635370
-
Arg
TCT
-
¡û
>C231545470
CP113088
Bacteroidota
Lacinutrix sp. HL-RS19 [CP113088]
734852
734778
-
Arg
TCT
-
¡û
>C231575679
CP116221
Bacteroidota
Psychroserpens sp. MSW6 [CP116221]
2181974
2181900
-
Arg
TCT
-
¡û
>W2110776953
VRMM01000017
Bacteroidota
Polaribacter reichenbachii LMG 26443 [VRMM]
28085
28159
+
Arg
TCT
[ENA]
¡û
>C241048386
CP039456
Bacteroidota
Changchengzhania lutea SM1355 [CP039456]
3908435
3908361
-
Arg
TCT
-
¡û
>C241114914
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
2134870
2134796
-
Arg
TCT
-
¡û
>C241114923
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
1211305
1211231
-
Arg
TCT
-
¡û
>C241281450
CP128313
Bacteroidota
Algibacter luteus HNIBRBA226 [CP128313]
2042294
2042368
+
Arg
TCT
-
¡û
>C241285159
CP128595
Bacteroidota
Polaribacter huanghezhanensis KCTC 32516 [CP128595]
1743378
1743452
+
Arg
TCT
-
¡û
>C241360076
CP141266
Bacteroidota
Flavivirga abyssicola MEBiC07777 [CP141266]
4384513
4384439
-
Arg
TCT
-
¡û
>C11111989
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2893312
2893238
-
Arg
TCT
[Ensembl]
¡û
>W1511360762
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
662236
662162
-
Arg
TCT
[ENA]
¡û
>W1511576860
LAQB01000078
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
2013
1939
-
Arg
TCT
[ENA]
¡û
>W11152619
AEYR01000003
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
61471
61545
+
Arg
TCT
[ENA]
¡û
>W1511694616
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
60990
60916
-
Arg
TCT
[ENA]
¡û
>C161083524
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
2202945
2203019
+
Arg
TCT
-
¡û
>W121031946
AHHE02000087
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
4789
4713
-
Arg
TCT
[ENA]
¡û
>W121110471
ALIH01000002
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
84006
83930
-
Arg
TCT
[ENA]
¡û
>C131013445
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
1051519
1051445
-
Arg
TCT
[Ensembl]
¡û
>W1610909719
LSFL01000042
Bacteroidota
Polaribacter reichenbachii [LSFL]
354069
353995
-
Arg
TCT
[ENA]
¡û
>W1610977619
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61552
61626
+
Arg
TCT
[ENA]
¡û
>W1710514559
FNBA01000002
Bacteroidota
Ulvibacter litoralis [FNBA]
772861
772935
+
Arg
TCT
[ENA]
¡û
>W1710537854
FNUB01000005
Bacteroidota
Tenacibaculum sp. MAR_2010_89 [FNUB]
3171499
3171425
-
Arg
TCT
[ENA]
¡û
>W1710538004
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1159451
1159377
-
Arg
TCT
[ENA]
¡û
>W1710558021
FOLN01000002
Bacteroidota
Algibacter lectus [FOLN]
530262
530188
-
Arg
TCT
[ENA]
¡û
>W1710570956
FOVN01000002
Bacteroidota
Bizionia echini [FOVN]
494814
494890
+
Arg
TCT
[ENA]
¡û
>W1710587340
FQYK01000004
Bacteroidota
Algibacter luteus lutea [FQYK]
283100
283176
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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