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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205630 (14 seq.)
>C171098345
CP019699
Bacillota
Novibacillus thermophilus SG-1 [CP019699]
159355
159431
+
Ile
GAT
-
¡û
>WENV180287477
OBIK01076767
[OBIK] hydrothermal vent metagenome; sea water
3
79
+
Ile
GAT
[ENA]
¡û
>W09108886
ABTQ01000155
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
1940
2016
+
Ile
GAT
[ENA]
¡û
>W09135915
BAAC01000092
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
19477
19401
-
Ile
GAT
[ENA]
¡û
>W1910004773
AWQQ01000055
Bacillota
Desulfotomaculum profundi Bs107 [AWQQ]
81879
81803
-
Ile
GAT
[ENA]
¡û
>W2010073254
AWQQ01000055
Bacillota
Desulfotomaculum profundi Bs107 [AWQQ]
81879
81803
-
Ile
GAT
[ENA]
¡û
>ENV09001720
ACQI01003615
Hydrothermal vent metagenome LCHCB.C1
4406
4330
-
Ile
GAT
[ENA]
¡û
>W2110459474
JAFBCW010000055
Bacillota
Desulfohalotomaculum tongense DSM 29799 [JAFBCW]
172
248
+
Ile
GAT
[ENA]
¡û
>C211393763
CP082237
Bacillota
Caldalkalibacillus thermarum TA2.A1 [CP082237]
2720267
2720191
-
Ile
GAT
-
¡û
>C231208985
CP085524
Bacillota
Zhaonella formicivorans k32 [CP085524]
639213
639289
+
Ile
GAT
-
¡û
>C231208999
CP085524
Bacillota
Zhaonella formicivorans k32 [CP085524]
2931046
2931122
+
Ile
GAT
-
¡û
>C10111811
CP002048
Bacillota
Syntrophothermus lipocalidus DSM 12680 [CP002048]
744755
744831
+
Ile
GAT
[Ensembl]
¡û
>C11106892
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
12311
12387
+
Ile
GAT
[Ensembl]
¡û
>C11106901
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
183630
183706
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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