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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20570 (144 seq.)
>W1710931945
LOHT01000306
Bacillota
Enterococcus faecium [LOHT]
8420
8333
-
Ser
CGA
[ENA]
¡û
>W1711077695
LSMC01000006
Bacillota
Enterococcus mundtii [LSMC]
17768
17681
-
Ser
CGA
[ENA]
¡û
>W1711096523
LTHV01000054
Bacillota
Enterococcus sp. HMSC072H05 [LTHV]
2464
2377
-
Ser
CGA
[ENA]
¡û
>W1711099517
LTKO01000045
Bacillota
Enterococcus sp. HMSC064A12 [LTKO]
65903
65990
+
Ser
CGA
[ENA]
¡û
>W1711108386
LTTS01000029
Bacillota
Enterococcus sp. HMSC066C04 [LTTS]
6756
6843
+
Ser
CGA
[ENA]
¡û
>W1711113221
LTYC01000119
Bacillota
Enterococcus sp. HMSC067C01 [LTYC]
28223
28136
-
Ser
CGA
[ENA]
¡û
>W1711114899
LTZR01000129
Bacillota
Enterococcus sp. HMSC14A10 [LTZR]
6756
6843
+
Ser
CGA
[ENA]
¡û
>W1711179008
LWHF01000084
Bacillota
Enterococcus faecium [LWHF]
104092
104005
-
Ser
CGA
[ENA]
¡û
>W1711186713
LWOL01000006
Bacillota
Enterococcus sp. HMSC05C03 [LWOL]
2495
2408
-
Ser
CGA
[ENA]
¡û
>W1711187044
LWOS01000134
Bacillota
Enterococcus sp. HMSC29A04 [LWOS]
6754
6841
+
Ser
CGA
[ENA]
¡û
>W1711350270
MCRG01000003
Bacillota
Enterococcus mundtii [MCRG]
100694
100781
+
Ser
CGA
[ENA]
¡û
>W1711460029
MJDY01000026
Bacillota
Enterococcus faecium [MJDY]
8919
9006
+
Ser
CGA
[ENA]
¡û
>W1711460125
MJEA01000007
Bacillota
Enterococcus villorum [MJEA]
122511
122424
-
Ser
CGA
[ENA]
¡û
>W1711460215
MJEB01000044
Bacillota
Enterococcus villorum [MJEB]
17236
17149
-
Ser
CGA
[ENA]
¡û
>W1711708541
MSTR01000001
Bacillota
Enterococcus mundtii [MSTR]
392113
392200
+
Ser
CGA
[ENA]
¡û
>W1712067859
NGLG01000001
Bacillota
Enterococcus sp. 3H8_DIV0648 [NGLG]
1305574
1305487
-
Ser
CGA
[ENA]
¡û
>W1712067933
NGLI01000001
Bacillota
Enterococcus sp. 3G1_DIV0629 [NGLI]
659511
659598
+
Ser
CGA
[ENA]
¡û
>W1712069533
NGML01000001
Bacillota
Enterococcus faecium [NGML]
1593347
1593434
+
Ser
CGA
[ENA]
¡û
>W1712069670
NGMO01000001
Bacillota
Enterococcus sp. 10A9_DIV0425 [NGMO]
754329
754242
-
Ser
CGA
[ENA]
¡û
>W131008772
AHXE01000016
Bacillota
Enterococcus faecium E1613 [AHXE]
65727
65640
-
Ser
CGA
[ENA]
¡û
>W131009376
AHXR01000005
Bacillota
Enterococcus faecium E1972 [AHXR]
161224
161311
+
Ser
CGA
[ENA]
¡û
>W131009815
AHXZ01000002
Bacillota
Enterococcus faecium E3083 [AHXZ]
767242
767155
-
Ser
CGA
[ENA]
¡û
>W131010928
AHYV01000047
Bacillota
Enterococcus avium ATCC 14025 [AHYV]
66069
66156
+
Ser
CGA
[ENA]
¡û
>W131019496
AIUU01000028
Bacillota
Enterococcus faecium UAA944 [AIUU]
72857
72944
+
Ser
CGA
[ENA]
¡û
>W131027345
AJAH01000016
Bacillota
Enterococcus mundtii ATCC 882 [AJAH]
105087
105174
+
Ser
CGA
[ENA]
¡û
>W131027599
AJAL01000016
Bacillota
Enterococcus raffinosus ATCC 49464 [AJAL]
7316
7403
+
Ser
CGA
[ENA]
¡û
>W131027759
AJAQ01000008
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
220015
220102
+
Ser
CGA
[ENA]
¡û
>W131201493
ASWC01000001
Bacillota
Enterococcus mundtii ATCC 882 [ASWC]
1608927
1608840
-
Ser
CGA
[ENA]
¡û
>W131201665
ASWF01000003
Bacillota
Enterococcus raffinosus ATCC 49464 [ASWF]
976614
976701
+
Ser
CGA
[ENA]
¡û
>W131202007
ASWL01000003
Bacillota
Enterococcus avium ATCC 14025 [ASWL]
641071
641158
+
Ser
CGA
[ENA]
¡û
>W131202061
ASWM01000005
Bacillota
Enterococcus durans ATCC 6056 [ASWM]
229990
230077
+
Ser
CGA
[ENA]
¡û
>WENV180146405
OAUF01000289
[OAUF] human gut metagenome; faeces
22989
23076
+
Ser
CGA
[ENA]
¢þ
>WENV180163203
OAVH01002081
[OAVH] human gut metagenome; faeces
7303
7390
+
Ser
CGA
[ENA]
¢þ
>WENV180175204
OAWB01021631
[OAWB] human gut metagenome; faeces
31
118
+
Ser
CGA
[ENA]
¢þ
>WENV180333278
OBLF01000456
[OBLF] metagenome; feces
14096
14183
+
Ser
CGA
[ENA]
¢þ
>WENV180407152
OBUQ01000519
[OBUQ] human gut metagenome; faeces
21055
20968
-
Ser
CGA
[ENA]
¢þ
>WENV180442000
OBWW01005299
[OBWW] human gut metagenome; faeces
1692
1779
+
Ser
CGA
[ENA]
¢þ
>WENV180457896
OBXV01000121
[OBXV] human gut metagenome; faeces
32418
32505
+
Ser
CGA
[ENA]
¢þ
>WENV180483074
OBZH01000107
[OBZH] human gut metagenome; faeces
65966
66053
+
Ser
CGA
[ENA]
¢þ
>W141147177
AWWM01000138
Bacillota
Enterococcus faecium UC7256 [AWWM]
54317
54230
-
Ser
CGA
[ENA]
¡û
>WENV182401702
OIER01007420
[OIER] human gut metagenome; human gut
1203
1116
-
Ser
CGA
[ENA]
¢þ
>WENV182404344
OIEU01015395
[OIEU] human gut metagenome; human gut
212
299
+
Ser
CGA
[ENA]
¢þ
>WENV182799965
OJTY01000046
[OJTY] human gut metagenome; human gut
2485
2398
-
Ser
CGA
[ENA]
¢þ
>WENV182800583
OJUF01000028
[OJUF] human gut metagenome; human gut
2485
2398
-
Ser
CGA
[ENA]
¢þ
>WENV182807656
OJVY01000071
[OJVY] human gut metagenome; human gut
57257
57344
+
Ser
CGA
[ENA]
¢þ
>WENV182807805
OJVZ01005512
[OJVZ] human gut metagenome; human gut
81
168
+
Ser
CGA
[ENA]
¢þ
>WENV182812383
OJXS01000568
[OJXS] human gut metagenome; human gut
2485
2398
-
Ser
CGA
[ENA]
¢þ
>WENV182812738
OJXU01005963
[OJXU] human gut metagenome; human gut
157
244
+
Ser
CGA
[ENA]
¢þ
>WENV182818795
OJZY01001550
[OJZY] human gut metagenome; human gut
485
572
+
Ser
CGA
[ENA]
¢þ
>WENV182823258
OKBS01001602
[OKBS] human gut metagenome; human gut
2315
2228
-
Ser
CGA
[ENA]
¢þ
>WENV182845207
OKJA01000310
[OKJA] human gut metagenome; human gut
7260
7347
+
Ser
CGA
[ENA]
¢þ
>WENV182845492
OKJD01002040
[OKJD] human gut metagenome; human gut
248
161
-
Ser
CGA
[ENA]
¢þ
>WENV182848601
OKKI01000445
[OKKI] human gut metagenome; human gut
839
926
+
Ser
CGA
[ENA]
¢þ
>WENV182849123
OKKN01001075
[OKKN] human gut metagenome; human gut
772
859
+
Ser
CGA
[ENA]
¢þ
>WENV182862175
OKPK01000055
[OKPK] human gut metagenome; human gut
57257
57344
+
Ser
CGA
[ENA]
¢þ
>WENV182863749
OKPU01001340
[OKPU] human gut metagenome; human gut
1282
1195
-
Ser
CGA
[ENA]
¢þ
>WENV182891109
OKSH01000175
[OKSH] human gut metagenome; faeces
11915
12002
+
Ser
CGA
[ENA]
¢þ
>WENV182938344
OKVD01003646
[OKVD] human gut metagenome; human gut
886
973
+
Ser
CGA
[ENA]
¢þ
>WENV182952019
OKVV01001055
[OKVV] human gut metagenome; human gut
7253
7340
+
Ser
CGA
[ENA]
¢þ
>WENV182953166
OKVX01013206
[OKVX] human gut metagenome; human gut
516
429
-
Ser
CGA
[ENA]
¢þ
>WENV182963032
OKWP01000098
[OKWP] human gut metagenome; stool
57249
57336
+
Ser
CGA
[ENA]
¢þ
>WENV183188511
OLPP01001760
[OLPP] human gut metagenome; faeces
5144
5057
-
Ser
CGA
[ENA]
¢þ
>WENV183238147
OLQY01006738
[OLQY] human gut metagenome; faeces
541
628
+
Ser
CGA
[ENA]
¢þ
>WENV183238567
OLQZ01000355
[OLQZ] human gut metagenome; faeces
2485
2398
-
Ser
CGA
[ENA]
¢þ
>WENV183780795
PPYF01182723
[PPYF] human gut metagenome; stool from patient with Crohn's disease
782
869
+
Ser
CGA
[ENA]
¢þ
>W141383560
JDFT01000003
Bacillota
Enterococcus mundtii CRL35 [JDFT]
87757
87670
-
Ser
CGA
[ENA]
¡û
>WENV170540000
CWGS01000015
[CWGS] human gut metagenome; ENVO:feces
22967
23054
+
Ser
CGA
[ENA]
¢þ
>WENV170540563
CWHE01000120
[CWHE] human gut metagenome; ENVO:feces
46841
46928
+
Ser
CGA
[ENA]
¢þ
>WENV170540845
CWHL01000160
[CWHL] human gut metagenome; ENVO:feces
15648
15735
+
Ser
CGA
[ENA]
¢þ
>WENV170541360
CXPN01001027
[CXPN] human gut metagenome genome assembly hA5, contig hA5_contig005349.; ENVO:feces
468
555
+
Ser
CGA
[ENA]
¢þ
>WENV170541494
CXPP01000333
[CXPP] human gut metagenome genome assembly hA6, contig hA6_contig004416.; ENVO:feces
725
812
+
Ser
CGA
[ENA]
¢þ
>WENV170541645
CXPR01000738
[CXPR] human gut metagenome genome assembly hA9, contig hA9_contig006182.; ENVO:feces
472
559
+
Ser
CGA
[ENA]
¢þ
>WENV170548045
CXTZ01000869
[CXTZ] Human gut metagenome genome assembly, contig: mA8_contig001645.; ENVO:feces
529
616
+
Ser
CGA
[ENA]
¢þ
>WENV170548238
CXUC01000221
[CXUC] Human gut metagenome genome assembly, contig: mC3_contig002133.; ENVO:feces
482
569
+
Ser
CGA
[ENA]
¢þ
>WENV170548735
CXUO01000248
[CXUO] Human gut metagenome genome assembly, contig: mB5_contig003596.; ENVO:feces
501
588
+
Ser
CGA
[ENA]
¢þ
>WENV170700233
LIDZ01008777
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
16527
16614
+
Ser
CGA
[ENA]
¢þ
>C181062268
CP022340
Bacillota
Enterococcus mundtii EMB156 [CP022340]
1800999
1800912
-
Ser
CGA
-
¡û
>C181188211
CP030110
Bacillota
Enterococcus faecium BM4105-RF [CP030110]
1055847
1055934
+
Ser
CGA
-
¡û
>C191063045
CP029066
Bacillota
Enterococcus mundtii Pe103 [CP029066]
1853581
1853494
-
Ser
CGA
-
¡û
>C191087452
CP032308
Bacillota
Enterococcus faecium HY07 [CP032308]
1098865
1098952
+
Ser
CGA
-
¡û
>C191098486
CP033041
Bacillota
Enterococcus faecium JE1 [CP033041]
1063951
1064038
+
Ser
CGA
-
¡û
>C191105251
CP033376
Bacillota
Enterococcus faecium Gr17 [CP033376]
95001
95088
+
Ser
CGA
-
¡û
>C191120818
CP034169
Bacillota
Enterococcus avium 352 [CP034169]
3280273
3280186
-
Ser
CGA
-
¡û
>W09116177
ACAZ01000014
Bacillota
Enterococcus faecium 1,141,733 [ACAZ]
8254
8341
+
Ser
CGA
[ENA]
¡û
>W1910175445
BJCC01000037
Bacillota
Enterococcus florum Gos25-1 [BJCC]
42637
42724
+
Ser
CGA
[ENA]
¡û
>W1910177629
BJDW01000032
Bacillota
Enterococcus viikkiensis LMG 26075 [BJDW]
5204
5291
+
Ser
CGA
[ENA]
¡û
>W1910177967
BJED01000012
Bacillota
Enterococcus hulanensis 190-7 [BJED]
1741
1654
-
Ser
CGA
[ENA]
¡û
>W1910180867
BJLL01000010
Bacillota
Enterococcus sp. NBRC 3427 [BJLL]
13563
13650
+
Ser
CGA
[ENA]
¡û
>W1910280365
FQST01000665
Bacillota
Enterococcus faecium [FQST]
393
306
-
Ser
CGA
[ENA]
¡û
>W1910283321
FRDY01000004
Bacillota
Enterococcus faecium [FRDY]
223121
223034
-
Ser
CGA
[ENA]
¡û
>W1910283442
FREA01000008
Bacillota
Enterococcus faecium [FREA]
7808
7895
+
Ser
CGA
[ENA]
¡û
>W1910283579
FREC01000014
Bacillota
Enterococcus faecium [FREC]
65903
65816
-
Ser
CGA
[ENA]
¡û
>W1910284629
FREQ01000018
Bacillota
Enterococcus faecium [FREQ]
65838
65751
-
Ser
CGA
[ENA]
¡û
>W1910312334
FRXV01000014
Bacillota
Enterococcus faecium [FRXV]
65903
65816
-
Ser
CGA
[ENA]
¡û
>W1910312772
FRYB01000013
Bacillota
Enterococcus faecium [FRYB]
60206
60119
-
Ser
CGA
[ENA]
¡û
>W1910313308
FRYI01000018
Bacillota
Enterococcus faecium [FRYI]
65838
65751
-
Ser
CGA
[ENA]
¡û
>C141000155
AP013036
Bacillota
Enterococcus mundtii QU 25 QU25 [AP013036]
1829151
1829064
-
Ser
CGA
[Ensembl]
¡û
>W1910609766
LERX01000002
Bacillota
Enterococcus faecium 8EA1 [LERX]
352706
352793
+
Ser
CGA
[ENA]
¡û
>W1911080994
NMZI01000001
Bacillota
Enterococcus faecium 9-F-6 [NMZI]
1776578
1776491
-
Ser
CGA
[ENA]
¡û
>W1911081070
NMZK01000001
Bacillota
Enterococcus faecium BMECCcat [NMZK]
1078997
1079084
+
Ser
CGA
[ENA]
¡û
>W1911084070
NNBZ01000001
Bacillota
Enterococcus pseudoavium CBA7133 [NNBZ]
1145090
1145003
-
Ser
CGA
[ENA]
¡û
>W1911578729
PEID01000013
Bacillota
Enterococcus faecium 8S3 [PEID]
22248
22161
-
Ser
CGA
[ENA]
¡û
>W1810045324
NBSL01000002
Bacillota
Enterococcus avium FDAARGOS_182 [NBSL]
913699
913786
+
Ser
CGA
[ENA]
¡û
>W1810045388
NBSM01000001
Bacillota
Enterococcus avium FDAARGOS_180 [NBSM]
111817
111904
+
Ser
CGA
[ENA]
¡û
>W1810111114
PHIL01000017
Bacillota
Enterococcus mundtii EM01 [PHIL]
48674
48761
+
Ser
CGA
[ENA]
¡û
>W1810311661
PTUS01000038
Bacillota
Enterococcus mundtii CVM N59820F [PTUS]
18104
18017
-
Ser
CGA
[ENA]
¡û
>W1810311694
PTUT01000029
Bacillota
Enterococcus faecium CVM N59745F [PTUT]
13131
13044
-
Ser
CGA
[ENA]
¡û
>W1810312410
PTVG01000041
Bacillota
Enterococcus faecium CVM N59943F [PTVG]
56290
56203
-
Ser
CGA
[ENA]
¡û
>W1810313409
PTVY01000008
Bacillota
Enterococcus faecium CVM N59624F [PTVY]
11281
11368
+
Ser
CGA
[ENA]
¡û
>W1810313732
PTWE01000056
Bacillota
Enterococcus faecium CVM N59589F [PTWE]
13131
13044
-
Ser
CGA
[ENA]
¡û
>W1810314099
PTWL01000069
Bacillota
Enterococcus durans CVM N59549F [PTWL]
22677
22764
+
Ser
CGA
[ENA]
¡û
>W1810319720
PUAP01000009
Bacillota
Enterococcus mundtii CVM N55263 [PUAP]
18109
18022
-
Ser
CGA
[ENA]
¡û
>W1810401104
PYGR01000017
Bacillota
Enterococcus mundtii H18-EM [PYGR]
7911
7998
+
Ser
CGA
[ENA]
¡û
>W1810401218
PYGT01000046
Bacillota
Enterococcus mundtii C11-EM [PYGT]
7953
8040
+
Ser
CGA
[ENA]
¡û
>W1810401255
PYGU01000046
Bacillota
Enterococcus mundtii P2-EM [PYGU]
12988
12901
-
Ser
CGA
[ENA]
¡û
>W1810706205
QMJX01000001
Bacillota
Enterococcus faecium KMB_624 [QMJX]
128704
128617
-
Ser
CGA
[ENA]
¡û
>W1810817931
QSCV01000055
Bacillota
Enterococcus avium OF02-3AC [QSCV]
2483
2396
-
Ser
CGA
[ENA]
¡û
>C151008743
CP006030
Bacillota
Enterococcus faecium T110 [CP006030]
1078549
1078636
+
Ser
CGA
[Ensembl]
¡û
>W10100308
ABQA01000014
Bacillota
Enterococcus faecium E980 [ABQA]
69983
69896
-
Ser
CGA
[ENA]
¡û
>W10115648
ADMM01000023
Bacillota
Enterococcus faecium PC4.1 [ADMM]
214266
214179
-
Ser
CGA
[ENA]
¡û
>W11100308
ABQA01000014
Bacillota
Enterococcus faecium E980 [ABQA]
69983
69896
-
Ser
CGA
[ENA]
¡û
>W1511346227
JRGY01000076
Bacillota
Enterococcus faecium L-X [JRGY]
13063
12976
-
Ser
CGA
[ENA]
¡û
>W11120145
ADMM01000023
Bacillota
Enterococcus faecium PC4.1 [ADMM]
214266
214179
-
Ser
CGA
[ENA]
¡û
>W1511440749
JUPQ01000135
Bacillota
Enterococcus hirae 877_EHIR [JUPQ]
12152
12239
+
Ser
CGA
[ENA]
¡û
>W1511447843
JUZB01000248
Bacillota
Enterococcus avium 639_EFCM [JUZB]
480
567
+
Ser
CGA
[ENA]
¡û
>W1511585228
LAXK01000056
Bacillota
Enterococcus faecium M3K31 [LAXK]
67399
67312
-
Ser
CGA
[ENA]
¡û
>W1511637517
LDNC01000063
Bacillota
Enterococcus faecium KACC15700 [LDNC]
12248
12335
+
Ser
CGA
[ENA]
¡û
>W1511637926
LDNJ01000100
Bacillota
Enterococcus faecium KACC16100 [LDNJ]
11199
11286
+
Ser
CGA
[ENA]
¡û
>W1610021464
ATKJ02000123
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
2079
2166
+
Ser
CGA
[ENA]
¡û
>W1610066534
BCPU01000050
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
21275
21188
-
Ser
CGA
[ENA]
¡û
>W1610066997
BCQF01000018
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
16558
16471
-
Ser
CGA
[ENA]
¡û
>W121121288
AMAA01000106
Bacillota
Enterococcus faecium TX1337RF [AMAA]
8955
9042
+
Ser
CGA
[ENA]
¡û
>W1610462518
FKLT01000389
Bacillota
Enterococcus faecium [FKLT]
681
768
+
Ser
CGA
[ENA]
¡û
>W1610789414
LOHT01000306
Bacillota
Enterococcus faecium [LOHT]
8420
8333
-
Ser
CGA
[ENA]
¡û
>W1610916864
LSMC01000006
Bacillota
Enterococcus mundtii [LSMC]
17768
17681
-
Ser
CGA
[ENA]
¡û
>W1610986917
LWHF01000084
Bacillota
Enterococcus faecium [LWHF]
104092
104005
-
Ser
CGA
[ENA]
¡û
>W1710018159
ATKJ02000123
Bacillota
Enterococcus raffinosus cftri2200 [ATKJ]
2079
2166
+
Ser
CGA
[ENA]
¡û
>W1710063872
BCPU01000050
Bacillota
Enterococcus raffinosus NBRC 100492 [BCPU]
21275
21188
-
Ser
CGA
[ENA]
¡û
>W1710064428
BCQF01000018
Bacillota
Enterococcus pseudoavium NBRC 100491 [BCQF]
16558
16471
-
Ser
CGA
[ENA]
¡û
>W1710461688
FKLT01000389
Bacillota
Enterococcus faecium [FKLT]
681
768
+
Ser
CGA
[ENA]
¡û
>W1710659115
JXKF01000022
Bacillota
Enterococcus avium [JXKF]
65890
65977
+
Ser
CGA
[ENA]
¡û
>W1710659442
JXKQ01000013
Bacillota
Enterococcus hermanniensis [JXKQ]
20586
20673
+
Ser
CGA
[ENA]
¡û
>W1710659778
JXLA01000046
Bacillota
Enterococcus raffinosus [JXLA]
6751
6838
+
Ser
CGA
[ENA]
¡û
>W1710743342
LGUN01000001
Bacillota
Enterococcus hirae 57-03-H11 [LGUN]
241114
241027
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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