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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205700 (26 seq.)
>C171074087
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
2172431
2172507
+
Arg
CCG
-
¡û
>WENV180114077
OAPR01140612
[OAPR] marine metagenome; seawater
219
143
-
Arg
CCG
[ENA]
¡û
>WENV180291571
OBIV01085112
[OBIV] soil metagenome; Clay
261
187
-
Arg
CCG
[ENA]
¡û
>WENV180394554
OBPS01016639
[OBPS] marine metagenome; ENVO:00002010 seawater
190
114
-
Arg
CCG
[ENA]
¡û
>WENV182549294
OJBY01000149
[OJBY] seawater metagenome; Sea water
8291
8215
-
Arg
CCG
[ENA]
¡û
>WENV182553646
OJCR01016976
[OJCR] seawater metagenome; Sea water
99
23
-
Arg
CCG
[ENA]
¡û
>WENV183734254
PJTZ01000492
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1138
1062
-
Arg
CCG
[ENA]
¡û
>WENV170118403
CENJ01064556
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7424
7348
-
Arg
CCG
[ENA]
¡û
>C181068280
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
1713498
1713422
-
Arg
CCG
-
¡û
>C09106552
CP001678
Alphaproteobacteria
Hirschia baltica ATCC 49814 [CP001678]
3383051
3382975
-
Arg
CCG
[Ensembl]
¡û
>W1910549862
FZQB01000002
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
321773
321697
-
Arg
CCG
[ENA]
¡û
>SRA1002939
SRR002326.111156
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
81
157
+
Arg
CCG
[SRA]
>W1810364895
PVTP01000001
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
333296
333372
+
Arg
CCG
[ENA]
¡û
>W1810503370
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
2447621
2447697
+
Arg
CCG
[ENA]
¡û
>W1810725068
QOCG01000011
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
158402
158326
-
Arg
CCG
[ENA]
¡û
>W2010431623
FZQB01000002
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
321773
321697
-
Arg
CCG
[ENA]
¡û
>W2011654703
SOBH01000001
Alphaproteobacteria
Litoreibacter halocynthiae DSM 29467 [SOBH]
990987
991063
+
Arg
CCG
[ENA]
¡û
>W2012439382
WTYS01000001
Alphaproteobacteria
Altererythrobacter gangjinensis JCM 17802 [WTYS]
548971
549047
+
Arg
CCG
[ENA]
¡û
>W2110570453
JAGSPC010000001
Alphaproteobacteria
Erythrobacter sp. WH158 [JAGSPC]
701286
701362
+
Arg
CCG
[ENA]
¡û
>W2110663600
JAHXZS010000002
Alphaproteobacteria
Aquisediminimonas sediminicola CH68-4 [JAHXZS]
391195
391271
+
Arg
CCG
[ENA]
¡û
>C231112503
CP067129
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [CP067129]
1005102
1005178
+
Arg
CCG
-
¡û
>C231112594
CP067136
Alphaproteobacteria
Paracoccus fistulariae KCTC 22803 [CP067136]
1432082
1432158
+
Arg
CCG
-
¡û
>C241053869
CP040818
Alphaproteobacteria
Paroceanicella profunda D4M1 [CP040818]
927863
927939
+
Arg
CCG
-
¡û
>C161038826
CP012023
Alphaproteobacteria
Celeribacter marinus IMCC12053 [CP012023]
546747
546671
-
Arg
CCG
[Ensembl]
¡û
>W1710567132
FOSM01000008
Alphaproteobacteria
Celeribacter marinus [FOSM]
110367
110291
-
Arg
CCG
[ENA]
¡û
>W1710583489
FQUV01000002
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
426879
426955
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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