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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.205964 (31 seq.)
>W1711664331
MQZX01000023
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
31882
31966
+
Leu
TAG
[ENA]
¡û
>W1711747369
MUKQ01000008
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
186280
186364
+
Leu
TAG
[ENA]
¡û
>W1711747450
MUKR01000007
Betaproteobacteria
Chromobacterium violaceum [MUKR]
186280
186364
+
Leu
TAG
[ENA]
¡û
>W1711747824
MUKW01000006
Betaproteobacteria
Chromobacterium violaceum [MUKW]
185206
185290
+
Leu
TAG
[ENA]
¡û
>W1711747905
MUKX01000007
Betaproteobacteria
Chromobacterium violaceum [MUKX]
185206
185290
+
Leu
TAG
[ENA]
¡û
>W1712081979
NHOO01000012
Betaproteobacteria
Chromobacterium violaceum [NHOO]
2160
2076
-
Leu
TAG
[ENA]
¡û
>C007299
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
2853221
2853305
+
Leu
TAG
[Ensembl]
¡û
>WENV001563
AACY020044510
Marine microbial communities from Global Ocean Sampling (GOS)
2523
2439
-
Leu
TAG
[ENA]
>WENV180377333
OBON01011823
[OBON] marine metagenome; sea water
700
784
+
Leu
TAG
[ENA]
¡û
>WENV180591129
OCOV01000337
[OCOV] marine metagenome; ENVO:01000301
1193
1109
-
Leu
TAG
[ENA]
¡û
>WENV170572449
FLOH01000876
[FLOH] marine metagenome; water
52341
52425
+
Leu
TAG
[ENA]
¡û
>C181093188
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
2586186
2586270
+
Leu
TAG
-
¡û
>C181117080
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
2600942
2601026
+
Leu
TAG
-
¡û
>C191199008
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
2827912
2827996
+
Leu
TAG
-
¡û
>W2010645261
JABXOB010000005
Betaproteobacteria
Chromobacterium violaceum RDN09 [JABXOB]
337572
337656
+
Leu
TAG
[ENA]
¡û
>W2011817903
UFVI01000001
Betaproteobacteria
Chromobacterium violaceum NCTC9757 [UFVI]
590981
591065
+
Leu
TAG
[ENA]
¡û
>W2011850745
UIGR01000001
Betaproteobacteria
Chromobacterium violaceum NCTC8684 [UIGR]
1334111
1334027
-
Leu
TAG
[ENA]
¡û
>W2110457345
JAFBBB010000005
Betaproteobacteria
Chromobacterium violaceum WCH4 [JAFBBB]
338780
338864
+
Leu
TAG
[ENA]
¡û
>W2110559933
JAGKRF010000007
Betaproteobacteria
Chromobacterium violaceum CGB1 [JAGKRF]
27998
27914
-
Leu
TAG
[ENA]
¡û
>W2110659065
JAHWXW010000006
Betaproteobacteria
Chromobacterium violaceum M23796 [JAHWXW]
21612
21528
-
Leu
TAG
[ENA]
¡û
>C201244839
CP050992
Betaproteobacteria
Chromobacterium violaceum FDAARGOS_635 [CP050992]
4069600
4069516
-
Leu
TAG
-
¡û
>W2110699548
JAIUJK010000005
Betaproteobacteria
Chromobacterium violaceum OUAT_2017 [JAIUJK]
52462
52378
-
Leu
TAG
[ENA]
¡û
>C211260635
CP069442
Betaproteobacteria
Chromobacterium violaceum FDAARGOS_1274 [CP069442]
657269
657185
-
Leu
TAG
-
¡û
>C211263999
CP069587
Betaproteobacteria
Chromobacterium violaceum FDAARGOS_1273 [CP069587]
4135517
4135601
+
Leu
TAG
-
¡û
>W2110770199
UFVO01000001
Betaproteobacteria
Chromobacterium violaceum NCTC8683 [UFVO]
472187
472271
+
Leu
TAG
[ENA]
¡û
>W1511484255
JWPW01000005
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
32349
32433
+
Leu
TAG
[ENA]
¡û
>W1511525820
JYGI01000014
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
193526
193610
+
Leu
TAG
[ENA]
¡û
>W1511640888
LDUM01000016
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
158336
158420
+
Leu
TAG
[ENA]
¡û
>W1511641394
LDUT01000001
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
415639
415723
+
Leu
TAG
[ENA]
¡û
>W1511641509
LDUU01000009
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
53554
53470
-
Leu
TAG
[ENA]
¡û
>W1511641791
LDUX01000014
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
158411
158495
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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