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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207358 (55 seq.)
>W1711339825
MCAP01000044
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
101141
101065
-
Arg
CCG
[ENA]
¡û
>W1711688836
MSDO01000012
Gammaproteobacteria
Salinicola socius [MSDO]
121572
121648
+
Arg
CCG
[ENA]
¡û
>W1711767823
MVAR01000007
Gammaproteobacteria
Thioalkalivibrio versutus [MVAR]
109671
109595
-
Arg
CCG
[ENA]
¡û
>W1712082136
NHOU01000024
Gammaproteobacteria
Salinicola salarius [NHOU]
40558
40482
-
Arg
CCG
[ENA]
¡û
>W131231237
AUIH01000031
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
41989
42065
+
Arg
CCG
[ENA]
¡û
>W131161407
AQXQ01000012
Gammaproteobacteria
Thioalkalivibrio sp. ALJ7 [AQXQ]
840080
840156
+
Arg
CCG
[ENA]
¡û
>W131161482
AQXS01000009
Gammaproteobacteria
Thioalkalivibrio sp. AKL6 [AQXS]
233130
233054
-
Arg
CCG
[ENA]
¡û
>W131170392
ARFM01000016
Gammaproteobacteria
Thioalkalivibrio versutus AL2 [ARFM]
222930
222854
-
Arg
CCG
[ENA]
¡û
>W131175173
ARJA01000034
Gammaproteobacteria
Thioalkalivibrio sp. AKL3 [ARJA]
310804
310880
+
Arg
CCG
[ENA]
¡û
>W131175217
ARJB01000031
Gammaproteobacteria
Thioalkalivibrio sp. AKL9 [ARJB]
265313
265389
+
Arg
CCG
[ENA]
¡û
>W131175409
ARJF01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALMg11 [ARJF]
242940
243016
+
Arg
CCG
[ENA]
¡û
>W131175457
ARJG01000032
Gammaproteobacteria
Thioalkalivibrio sp. AKL12 [ARJG]
184555
184479
-
Arg
CCG
[ENA]
¡û
>W131178255
ARLK01000065
Gammaproteobacteria
Thioalkalivibrio sp. ALMg13-2 [ARLK]
80063
80139
+
Arg
CCG
[ENA]
¡û
>W131178318
ARLM01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALMg3 [ARLM]
146226
146150
-
Arg
CCG
[ENA]
¡û
>W131178953
ARLZ01000019
Gammaproteobacteria
Thioalkalivibrio sp. ALM2T [ARLZ]
108167
108243
+
Arg
CCG
[ENA]
¡û
>W131179756
ARMQ01000010
Gammaproteobacteria
Thioalkalivibrio sp. AKL10 [ARMQ]
925465
925389
-
Arg
CCG
[ENA]
¡û
>W141022631
AJUE01000034
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila ATCC 51935 [AJUE]
333330
333406
+
Arg
CCG
[ENA]
¡û
>WENV181294048
OFHG01065786
[OFHG] soil metagenome; Clay
520
596
+
Arg
CCG
[ENA]
¡û
>WENV181321524
OFKM01007081
[OFKM] marine metagenome; sea ice
127
51
-
Arg
CCG
[ENA]
¡û
>WENV181322169
OFKP01016706
[OFKP] marine metagenome; sea ice
337
413
+
Arg
CCG
[ENA]
¡û
>WENV181323049
OFKW01001151
[OFKW] marine metagenome; sea ice
1714
1638
-
Arg
CCG
[ENA]
¡û
>WENV181324489
OFLE01028618
[OFLE] marine metagenome; sea ice
380
456
+
Arg
CCG
[ENA]
¡û
>WENV181324816
OFLH01010572
[OFLH] marine metagenome; sea ice
172
248
+
Arg
CCG
[ENA]
¡û
>WENV183615046
OOEA01038314
[OOEA] marine metagenome; sea ice
279
203
-
Arg
CCG
[ENA]
¡û
>WENV183623127
OOFX01013435
[OOFX] marine metagenome; sea ice
793
717
-
Arg
CCG
[ENA]
¡û
>WENV183623692
OOGA01038675
[OOGA] marine metagenome; sea ice
522
598
+
Arg
CCG
[ENA]
¡û
>WENV183627570
OOGL01013235
[OOGL] marine metagenome; sea ice
511
587
+
Arg
CCG
[ENA]
¡û
>WENV183630635
OOGU01000036
[OOGU] marine metagenome; sea ice
7723
7799
+
Arg
CCG
[ENA]
¡û
>WENV170176741
CEOS01117701
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
578
654
+
Arg
CCG
[ENA]
¡û
>WENV170372199
CETS01071577
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
283
+
Arg
CCG
[ENA]
¡û
>WENV170521202
CEWF01125596
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
392
468
+
Arg
CCG
[ENA]
¡û
>WENV170672873
LAZR01002875
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
109
33
-
Arg
CCG
[ENA]
¡û
>WENV170682342
LFIK01000007
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
36659
36735
+
Arg
CCG
[ENA]
¡û
>WENV170683238
LFIK01007529
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
8497
8421
-
Arg
CCG
[ENA]
¡û
>W141815536
JQIW01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ1 [JQIW]
679740
679816
+
Arg
CCG
[ENA]
¡û
>W1810200015
PNRF01000017
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
106730
106654
-
Arg
CCG
[ENA]
¡û
>W1810444571
PZJS01000015
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
39446
39370
-
Arg
CCG
[ENA]
¡û
>W1810444621
PZJT01000012
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
84217
84293
+
Arg
CCG
[ENA]
¡û
>W1810579317
QEQK01000012
Gammaproteobacteria
Abyssibacter profundi OUC007 [QEQK]
1265
1189
-
Arg
CCG
[ENA]
¡û
>W1810898055
QUZK01000032
Gammaproteobacteria
Wenzhouxiangella sediminis XDB06 [QUZK]
17893
17969
+
Arg
CCG
[ENA]
¡û
>C151091933
CP012154
Gammaproteobacteria
Wenzhouxiangella marina KCTC 42284 [CP012154]
3009347
3009271
-
Arg
CCG
-
¡û
>W2010099443
BJUK01000013
Gammaproteobacteria
Halomonas pacifica NBRC 102220 [BJUK]
65485
65561
+
Arg
CCG
[ENA]
¡û
>W2010488700
JAAIVI010000017
Gammaproteobacteria
Wenzhouxiangella sp. XN201 [JAAIVI]
284006
284082
+
Arg
CCG
[ENA]
¡û
>W2012141818
VTPX01000004
Gammaproteobacteria
Salinicola sp. L3 [VTPX]
87818
87742
-
Arg
CCG
[ENA]
¡û
>W2110405915
JAEDAF010000010
Gammaproteobacteria
Halomonas pacifica CARE-V15 [JAEDAF]
127707
127783
+
Arg
CCG
[ENA]
¡û
>C201211237
CP048030
Gammaproteobacteria
Sinimarinibacterium sp. NLF-5-8 [CP048030]
2021491
2021415
-
Arg
CCG
-
¡û
>W2110753793
NRRV01000066
Gammaproteobacteria
Thiohalocapsa halophila DSM 6210 [NRRV]
12138
12062
-
Arg
CCG
[ENA]
¡û
>W2110754404
NRSK01000014
Gammaproteobacteria
Ectothiorhodospira mobilis DSM 237 [NRSK]
26836
26912
+
Arg
CCG
[ENA]
¡û
>C231421779
CP099975
Gammaproteobacteria
Halomonas sp. Y3 [CP099975]
4002829
4002753
-
Arg
CCG
-
¡û
>W2110781694
WHVL01000003
Gammaproteobacteria
Halomonas malpeensis prim 29 [WHVL]
165461
165385
-
Arg
CCG
[ENA]
¡û
>C241355288
CP140261
Gammaproteobacteria
Salinicola sp. LHM [CP140261]
74274
74350
+
Arg
CCG
-
¡û
>W2310018839
BRCY01000014
Gammaproteobacteria
Halomonas sp. NCCP-2165 [BRCY]
30924
31000
+
Arg
CCG
[ENA]
¡û
>C161038410
CP011994
Gammaproteobacteria
Ectothiorhodospira sp. BSL-9 [CP011994]
1371924
1372000
+
Arg
CCG
[Ensembl]
¡û
>W1710543526
FOAA01000026
Gammaproteobacteria
Ectothiorhodospira marina [FOAA]
2440
2516
+
Arg
CCG
[ENA]
¡û
>W1710569634
FOUO01000014
Gammaproteobacteria
Ectothiorhodospira mobilis [FOUO]
8922
8846
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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