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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20749 (111 seq.)
>W1711224748
LXUH01000053
Bacillota
Bacillus sp. MKU004 [LXUH]
1368
1278
-
Ser
GCT
[ENA]
¡û
>W131196444
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
673
762
+
Ser
GCT
[ENA]
¡û
>W1711434721
MINN01000044
Bacillota
Rossellomorea aquimaris [MINN]
1526
1436
-
Ser
GCT
[ENA]
¡û
>W1711484835
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
1390
1479
+
Ser
GCT
[ENA]
¡û
>W1711485052
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
197
286
+
Ser
GCT
[ENA]
¡û
>C171057558
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1552948
1552859
-
Ser
GCT
-
¡û
>C012617
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
451830
451917
+
Ser
GCT
[Ensembl]
¡û
>WENV180199103
OBAE01000011
[OBAE] human gut metagenome; human gut
127693
127783
+
Ser
GCT
[ENA]
¢þ
>WENV180549665
OCIY01238908
[OCIY] human gut metagenome; human gut
20
110
+
Ser
GCT
[ENA]
¢þ
>WENV180703327
ODEI01000507
[ODEI] human metagenome; G_DNA_Stool
15000
14910
-
Ser
GCT
[ENA]
¢þ
>WENV180762422
ODHZ01129763
[ODHZ] human metagenome; G_DNA_Stool
219
309
+
Ser
GCT
[ENA]
¢þ
>W141092460
AVAA01000303
Bacillota
Schleiferilactobacillus shenzhenensis LY-73 [AVAA]
344
255
-
Ser
GCT
[ENA]
¡û
>WENV181053080
ODYI01000007
[ODYI] human metagenome; G_DNA_Stool
46736
46646
-
Ser
GCT
[ENA]
¢þ
>WENV181126584
OEFW01000012
[OEFW] human metagenome; G_DNA_Stool
130250
130340
+
Ser
GCT
[ENA]
¢þ
>W141146472
AWVP01000103
Bacillota
Gemella bergeri ATCC 700627 [AWVP]
315
226
-
Ser
GCT
[ENA]
¡û
>WENV181582982
OGKD01000060
[OGKD] metagenome; Human gut stool
36532
36622
+
Ser
GCT
[ENA]
¢þ
>WENV181646093
OGNO01000203
[OGNO] metagenome; Human gut stool
27015
26925
-
Ser
GCT
[ENA]
¢þ
>WENV181721127
OGPV01000452
[OGPV] human gut metagenome; faeces
6438
6348
-
Ser
GCT
[ENA]
¢þ
>WENV181894580
OGXR01000402
[OGXR] human gut metagenome; faeces
26581
26671
+
Ser
GCT
[ENA]
¢þ
>WENV181929892
OGYP01000002
[OGYP] human gut metagenome; faeces
11885
11975
+
Ser
GCT
[ENA]
¢þ
>WENV181978996
OHAF01000164
[OHAF] human gut metagenome; faeces
58495
58585
+
Ser
GCT
[ENA]
¢þ
>WENV182115162
OHJA01000603
[OHJA] human gut metagenome; feces
12763
12853
+
Ser
GCT
[ENA]
¢þ
>WENV182491946
OISO01002189
[OISO] human gut metagenome; human gut
183
93
-
Ser
GCT
[ENA]
¢þ
>W141266352
CCMN01000010
Bacillota
Rossellomorea aquimaris [CCMN]
74912
75002
+
Ser
GCT
[ENA]
¡û
>WENV182716700
OJPK01000004
[OJPK] human gut metagenome; stool sample
180690
180600
-
Ser
GCT
[ENA]
¢þ
>WENV182880217
OKSA01000053
[OKSA] human gut metagenome; faeces
20994
21084
+
Ser
GCT
[ENA]
¢þ
>WENV182886235
OKSD01000037
[OKSD] human gut metagenome; faeces
29388
29478
+
Ser
GCT
[ENA]
¢þ
>W141289266
JAQT01000006
Bacillota
Shuttleworthia sp. MSX8B [JAQT]
271
182
-
Ser
GCT
[ENA]
¡û
>WENV182970308
OKXD01006949
[OKXD] human gut metagenome; human gut
514
427
-
Ser
GCT
[ENA]
¢þ
>WENV182970662
OKXE01015091
[OKXE] human gut metagenome; human gut
208
121
-
Ser
GCT
[ENA]
¢þ
>WENV182978374
OKYH01016845
[OKYH] human gut metagenome; human gut
487
576
+
Ser
GCT
[ENA]
¢þ
>WENV183114950
OLNQ01002622
[OLNQ] human gut metagenome; faeces
8053
7963
-
Ser
GCT
[ENA]
¢þ
>WENV183125192
OLNY01000113
[OLNY] human gut metagenome; faeces
73594
73684
+
Ser
GCT
[ENA]
¢þ
>WENV183129621
OLOA01000062
[OLOA] human gut metagenome; faeces
307
397
+
Ser
GCT
[ENA]
¢þ
>WENV183144063
OLOL01000543
[OLOL] human gut metagenome; faeces
30430
30520
+
Ser
GCT
[ENA]
¢þ
>WENV183175223
OLPF01000088
[OLPF] human gut metagenome; faeces
72684
72594
-
Ser
GCT
[ENA]
¢þ
>WENV183176843
OLPG01000010
[OLPG] human gut metagenome; faeces
72993
73083
+
Ser
GCT
[ENA]
¢þ
>WENV183184211
OLPN01000004
[OLPN] human gut metagenome; faeces
170489
170399
-
Ser
GCT
[ENA]
¢þ
>WENV183247448
OLRF01003765
[OLRF] human gut metagenome; faeces
3773
3683
-
Ser
GCT
[ENA]
¢þ
>WENV183308861
OLUK01001989
[OLUK] human gut metagenome; faeces
203
115
-
Ser
GCT
[ENA]
¢þ
>WENV183406696
OMAA01054448
[OMAA] human gut metagenome; feces
461
549
+
Ser
GCT
[ENA]
¢þ
>WENV183512024
OMJW01022069
[OMJW] termite gut metagenome; termite gut
422
332
-
Ser
GCT
[ENA]
¢þ
>WENV183566668
OOCA01019649
[OOCA] human gut metagenome; human gut
838
750
-
Ser
GCT
[ENA]
¢þ
>WENV183767045
PPYE01360036
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3600
3510
-
Ser
GCT
[ENA]
¢þ
>WENV170005036
AJWZ01011006
[AJWZ] human gut metagenome; obese human gut
13828
13738
-
Ser
GCT
[ENA]
¢þ
>WENV170103195
CEAX01038898
[CEAX] gut metagenome; human stools
1412
1322
-
Ser
GCT
[ENA]
¢þ
>C181003647
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26928
26839
-
Ser
GCT
-
¡û
>C181044608
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
451514
451603
+
Ser
GCT
-
¡û
>C181066093
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1625650
1625561
-
Ser
GCT
-
¡û
>C181066160
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1621253
1621164
-
Ser
GCT
-
¡û
>C181070033
CP022615
Bacillota
Gemella sp. ND 6198 [CP022615]
1169238
1169149
-
Ser
GCT
-
¡û
>C181071471
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4593
4682
+
Ser
GCT
-
¡û
>C181074392
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
1561621
1561531
-
Ser
GCT
-
¡û
>C181113650
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326532
1326621
+
Ser
GCT
-
¡û
>C181123530
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
491874
491963
+
Ser
GCT
-
¡û
>C181186090
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1505751
1505662
-
Ser
GCT
-
¡û
>C181194834
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1640016
1639927
-
Ser
GCT
-
¡û
>C181227659
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473003
473092
+
Ser
GCT
-
¡û
>C191004206
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1545677
1545588
-
Ser
GCT
-
¡û
>C191040475
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
4450
4539
+
Ser
GCT
-
¡û
>C191092689
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
520759
520848
+
Ser
GCT
-
¡û
>C191134882
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1618860
1618771
-
Ser
GCT
-
¡û
>W1910270959
FQLS01000005
Bacillota
Gemella massiliensis Marseille-P3249 [FQLS]
540246
540157
-
Ser
GCT
[ENA]
¡û
>W1910605594
LEOZ01000038
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
2815
2726
-
Ser
GCT
[ENA]
¡û
>W1910605643
LEPA01000037
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
3884
3795
-
Ser
GCT
[ENA]
¡û
>W1910751974
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
374
463
+
Ser
GCT
[ENA]
¡û
>W1910752006
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26962
26873
-
Ser
GCT
[ENA]
¡û
>W1910753024
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
671
760
+
Ser
GCT
[ENA]
¡û
>W1910827207
MWSH01000012
Bacillota
Bacillus sp. DSM 27956 [MWSH]
1605
1515
-
Ser
GCT
[ENA]
¡û
>W1910827229
MWSH01000023
Bacillota
Bacillus sp. DSM 27956 [MWSH]
1366
1456
+
Ser
GCT
[ENA]
¡û
>W1910899444
NGJS01000007
Bacillota
Vagococcus vulneris SS1995 [NGJS]
117193
117104
-
Ser
GCT
[ENA]
¡û
>W1910899451
NGJS01000007
Bacillota
Vagococcus vulneris SS1995 [NGJS]
116569
116480
-
Ser
GCT
[ENA]
¡û
>W1910899621
NGJV01000022
Bacillota
Vagococcus penaei LMG 24833 [NGJV]
1591
1680
+
Ser
GCT
[ENA]
¡û
>W1910899629
NGJV01000022
Bacillota
Vagococcus penaei LMG 24833 [NGJV]
2318
2407
+
Ser
GCT
[ENA]
¡û
>W1911493456
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
750
839
+
Ser
GCT
[ENA]
¡û
>W1911504220
OESV01000002
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
657999
657909
-
Ser
GCT
[ENA]
¡û
>W1911533904
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
27056
26967
-
Ser
GCT
[ENA]
¡û
>W1911551508
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
779
868
+
Ser
GCT
[ENA]
¡û
>W1911770367
QXIR01000007
Bacillota
Bacillus salacetis SKP7-4 [QXIR]
2023
2113
+
Ser
GCT
[ENA]
¡û
>W1810057731
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
1715684
1715774
+
Ser
GCT
[ENA]
¡û
>W1810057778
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
605767
605677
-
Ser
GCT
[ENA]
¡û
>W1810367766
PVYY01000012
Bacillota
Bacillus sp. V-88 [PVYY]
1605
1515
-
Ser
GCT
[ENA]
¡û
>W1810367788
PVYY01000023
Bacillota
Bacillus sp. V-88 [PVYY]
1366
1456
+
Ser
GCT
[ENA]
¡û
>W1511402313
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
713
802
+
Ser
GCT
[ENA]
¡û
>C161069198
CP014233
Bacillota
Gemella sp. oral taxon 928 W2231 [CP014233]
714495
714406
-
Ser
GCT
[Ensembl]
¡û
>C161100151
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
577169
577258
+
Ser
GCT
[Ensembl]
¡û
>W1610030955
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
96348
96259
-
Ser
GCT
[ENA]
¡û
>W1610034183
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
118
29
-
Ser
GCT
[ENA]
¡û
>W1610034937
AZEC01000045
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
313
224
-
Ser
GCT
[ENA]
¡û
>W1610035833
AZEU01000275
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [AZEU]
9398
9309
-
Ser
GCT
[ENA]
¡û
>W1610035962
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
703
792
+
Ser
GCT
[ENA]
¡û
>W1610036410
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
712
801
+
Ser
GCT
[ENA]
¡û
>W1610037224
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13886
13797
-
Ser
GCT
[ENA]
¡û
>W1610044129
BBAH01000096
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [BBAH]
1033
1122
+
Ser
GCT
[ENA]
¡û
>W1610045913
BBBX01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
1117
1206
+
Ser
GCT
[ENA]
¡û
>W1610515146
FMAU01000010
Bacillota
[Bacillus] enclensis [FMAU]
75516
75606
+
Ser
GCT
[ENA]
¡û
>W1610638667
LIXZ01000009
Bacillota
Rossellomorea vietnamensis [LIXZ]
666
756
+
Ser
GCT
[ENA]
¡û
>W1611008712
LXUH01000053
Bacillota
Bacillus sp. MKU004 [LXUH]
1368
1278
-
Ser
GCT
[ENA]
¡û
>W1710027907
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
96348
96259
-
Ser
GCT
[ENA]
¡û
>W1710031310
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
118
29
-
Ser
GCT
[ENA]
¡û
>W1710032064
AZEC01000045
Bacillota
Schleiferilactobacillus perolens DSM 12744 [AZEC]
313
224
-
Ser
GCT
[ENA]
¡û
>W1710032872
AZEU01000275
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [AZEU]
9398
9309
-
Ser
GCT
[ENA]
¡û
>W1710033001
AZEX01000066
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
703
792
+
Ser
GCT
[ENA]
¡û
>W1710033449
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
712
801
+
Ser
GCT
[ENA]
¡û
>W1710034263
AZFW01000151
Bacillota
Schleiferilactobacillus harbinensis DSM 16991 [AZFW]
13886
13797
-
Ser
GCT
[ENA]
¡û
>W1710041289
BBAH01000096
Bacillota
Lacticaseibacillus manihotivorans DSM 13343 = JCM 12514 [BBAH]
1033
1122
+
Ser
GCT
[ENA]
¡û
>W1710042754
BBBX01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 [BBBX]
1117
1206
+
Ser
GCT
[ENA]
¡û
>W1710500836
FMAU01000010
Bacillota
[Bacillus] enclensis [FMAU]
75516
75606
+
Ser
GCT
[ENA]
¡û
>W1710604700
FVZH01000012
Bacillota
Bacillus sp. V-88 [FVZH]
1605
1515
-
Ser
GCT
[ENA]
¡û
>W1710604722
FVZH01000023
Bacillota
Bacillus sp. V-88 [FVZH]
1366
1456
+
Ser
GCT
[ENA]
¡û
>W1710774498
LIXZ01000009
Bacillota
Rossellomorea vietnamensis [LIXZ]
666
756
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK