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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207641 (100 seq.)
>W131109268
APHR01000107
Gammaproteobacteria
Methylophaga lonarensis MPL [APHR]
2426
2350
-
Ile
GAT
[ENA]
¡û
>W131109271
APHR01000111
Gammaproteobacteria
Methylophaga lonarensis MPL [APHR]
356
280
-
Ile
GAT
[ENA]
¡û
>WENV180093719
MPMF02340079
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
34
110
+
Ile
GAT
[ENA]
¡û
>WENV180285075
OBID01215360
[OBID] metagenome; sludge
157
81
-
Ile
GAT
[ENA]
¡û
>WENV180354845
OBNE01024166
[OBNE] groundwater metagenome; groundwater
96
172
+
Ile
GAT
[ENA]
¡û
>WENV180369651
OBOG01220432
[OBOG] marine metagenome; seawater
265
192
-
Ile
GAT
[ENA]
¡û
>WENV180692376
OCZS010493950
[OCZS] soil metagenome; soil
358
434
+
Ile
GAT
[ENA]
¡û
>C08003013
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1893048
1892975
-
Ile
GAT
[Ensembl]
¡û
>WENV182565750
OJEH01040189
[OJEH] seawater metagenome; Sea water
579
503
-
Ile
GAT
[ENA]
¡û
>WENV183702195
PDVH01023413
[PDVH] alkali sediment metagenome; glacial lake sediment
293
217
-
Ile
GAT
[ENA]
¡û
>WENV183702945
PDVJ01000964
[PDVJ] alkali sediment metagenome; glacial lake sediment
9277
9353
+
Ile
GAT
[ENA]
¡û
>WENV170701299
LKGT01006499
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
8816
8740
-
Ile
GAT
[ENA]
¡û
>W1910729330
MGYK01000016
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190 [MGYK]
11127
11203
+
Ile
GAT
[ENA]
¡û
>W1910729726
MGYX01000024
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76 [MGYX]
9181
9257
+
Ile
GAT
[ENA]
¡û
>W1911118975
NOLM01000022
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
95919
95843
-
Ile
GAT
[ENA]
¡û
>W2010520293
JAANBD010000023
Gammaproteobacteria
Thioalkalivibrio sp. XN279 [JAANBD]
305713
305789
+
Ile
GAT
[ENA]
¡û
>W2010862759
MGYK01000016
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_01_FULL_47_190 [MGYK]
11127
11203
+
Ile
GAT
[ENA]
¡û
>W2010863156
MGYX01000024
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_12_FULL_47_76 [MGYX]
9181
9257
+
Ile
GAT
[ENA]
¡û
>W2011012226
NOLM01000022
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
95919
95843
-
Ile
GAT
[ENA]
¡û
>W2011012268
NOLN01000021
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
95578
95502
-
Ile
GAT
[ENA]
¡û
>W2110648402
JAHUUI010000010
Gammaproteobacteria
Cardiobacteriaceae bacterium TAE3-ERU3 [JAHUUI]
3739
3663
-
Ile
GAT
[ENA]
¡û
>W2110772346
VFIV01000003
Gammaproteobacteria
Coxiella endosymbiont of Ornithodoros amblus AB428 [VFIV]
18582
18658
+
Ile
GAT
[ENA]
¡û
>C231652076
OU015521
Gammaproteobacteria
Coxiella endosymbiont of Dermacentor marginatus [OU015521]
461230
461306
+
Ile
GAT
-
¡û
>C121011858
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
2415605
2415681
+
Ile
GAT
[Ensembl]
¡û
>C121011868
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
1725775
1725699
-
Ile
GAT
[Ensembl]
¡û
>C121011875
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
1025599
1025523
-
Ile
GAT
[Ensembl]
¡û
>ENV002701
AY934248
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002703
AY934249
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002707
AY934251
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002710
AY934253
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002712
AY934254
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002714
AY934255
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002716
AY934256
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002720
AY934258
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002723
AY934260
Environmental sample from ENV division of INSDC
108
184
+
Ile
GAT
[ENA]
>ENV002727
AY934262
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002729
AY934263
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002731
AY934264
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002733
AY934265
Environmental sample from ENV division of INSDC
74
150
+
Ile
GAT
[ENA]
>ENV002735
AY934266
Environmental sample from ENV division of INSDC
74
150
+
Ile
GAT
[ENA]
>ENV002737
AY934267
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002739
AY934268
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002741
AY934269
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002743
AY934270
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002745
AY934271
Environmental sample from ENV division of INSDC
78
154
+
Ile
GAT
[ENA]
>ENV002747
AY934272
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002749
AY934273
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002753
AY934275
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002755
AY934276
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002757
AY934277
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002759
AY934278
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002761
AY934279
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002763
AY934280
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002765
AY934281
Environmental sample from ENV division of INSDC
122
200
+
Ile
GAT
[ENA]
>ENV002766
AY934282
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002768
AY934283
Environmental sample from ENV division of INSDC
122
200
+
Ile
GAT
[ENA]
>ENV002769
AY934284
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002771
AY934285
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002773
AY934286
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002775
AY934288
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002781
AY934293
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002783
AY934294
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002785
AY934295
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002787
AY934296
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002794
AY934300
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002796
AY934301
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002798
AY934302
Environmental sample from ENV division of INSDC
74
150
+
Ile
GAT
[ENA]
>ENV002800
AY934303
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002802
AY934304
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002817
AY934312
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002819
AY934313
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002829
AY934319
Environmental sample from ENV division of INSDC
191
267
+
Ile
GAT
[ENA]
>ENV002831
AY934320
Environmental sample from ENV division of INSDC
191
267
+
Ile
GAT
[ENA]
>ENV002833
AY934321
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002849
AY934330
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002856
AY934334
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002858
AY934335
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002861
AY934337
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002863
AY934338
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002867
AY934340
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002869
AY934341
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002881
AY934348
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002906
AY934364
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002907
AY934365
Environmental sample from ENV division of INSDC
75
151
+
Ile
GAT
[ENA]
>ENV002909
AY934366
Environmental sample from ENV division of INSDC
74
150
+
Ile
GAT
[ENA]
>ENV002915
AY934369
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002917
AY934370
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002923
AY934373
Environmental sample from ENV division of INSDC
74
150
+
Ile
GAT
[ENA]
>ENV002925
AY934374
Environmental sample from ENV division of INSDC
71
147
+
Ile
GAT
[ENA]
>ENV002927
AY934375
Environmental sample from ENV division of INSDC
71
147
+
Ile
GAT
[ENA]
>ENV002931
AY934377
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002933
AY934378
Environmental sample from ENV division of INSDC
71
147
+
Ile
GAT
[ENA]
>ENV002937
AY934380
Environmental sample from ENV division of INSDC
72
148
+
Ile
GAT
[ENA]
>ENV002939
AY934381
Environmental sample from ENV division of INSDC
127
205
+
Ile
GAT
[ENA]
>ENV002951
AY934388
Environmental sample from ENV division of INSDC
78
154
+
Ile
GAT
[ENA]
>ENV002971
AY934400
Environmental sample from ENV division of INSDC
71
147
+
Ile
GAT
[ENA]
>ENV003215
DQ009131
Environmental sample from ENV division of INSDC
1590
1666
+
Ile
GAT
[ENA]
>ENV003765
DQ009451
Environmental sample from ENV division of INSDC
1593
1669
+
Ile
GAT
[ENA]
>ENV003797
DQ009470
Environmental sample from ENV division of INSDC
1622
1700
+
Ile
GAT
[ENA]
>ENV004259
DQ491460
Environmental sample from ENV division of INSDC
275
351
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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