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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207845 (136 seq.)
>W1712036138
NFHH01000033
Bacillota
Blautia sp. An81 [NFHH]
39205
39124
-
Tyr
GTA
[ENA]
¡û
>W1712037473
NFIF01000030
Bacillota
Blautia sp. An46 [NFIF]
28338
28257
-
Tyr
GTA
[ENA]
¡û
>WENV180123421
OASW01001659
[OASW] human gut metagenome; faeces
2446
2529
+
Tyr
GTA
[ENA]
¡û
>WENV180124960
OASY01000317
[OASY] human gut metagenome; faeces
21474
21557
+
Tyr
GTA
[ENA]
¡û
>WENV180125765
OASZ01000061
[OASZ] human gut metagenome; faeces
32051
31968
-
Tyr
GTA
[ENA]
¡û
>WENV180125840
OASZ01000146
[OASZ] human gut metagenome; faeces
331
412
+
Tyr
GTA
[ENA]
¡û
>WENV180138689
OATQ01002135
[OATQ] human gut metagenome; faeces
2501
2416
-
Tyr
GTA
[ENA]
¡û
>WENV180140938
OATU01001183
[OATU] human gut metagenome; faeces
13715
13798
+
Tyr
GTA
[ENA]
¡û
>WENV180148425
OAUK01000121
[OAUK] human gut metagenome; faeces
44087
44004
-
Tyr
GTA
[ENA]
¡û
>WENV180182306
OAWO01006276
[OAWO] human gut metagenome; faeces
71
154
+
Tyr
GTA
[ENA]
¡û
>WENV180187225
OAWV01051520
[OAWV] human gut metagenome; faeces
141
58
-
Tyr
GTA
[ENA]
¡û
>WENV180306182
OBJP01000109
[OBJP] human gut metagenome; human gut
51462
51546
+
Tyr
GTA
[ENA]
¡û
>WENV180306212
OBJP01000143
[OBJP] human gut metagenome; human gut
64895
64812
-
Tyr
GTA
[ENA]
¡û
>WENV180306487
OBJP01000920
[OBJP] human gut metagenome; human gut
157
74
-
Tyr
GTA
[ENA]
¡û
>WENV180307075
OBJP01096490
[OBJP] human gut metagenome; human gut
75
156
+
Tyr
GTA
[ENA]
¡û
>WENV180307308
OBJQ01000070
[OBJQ] human gut metagenome; human gut
73908
73991
+
Tyr
GTA
[ENA]
¡û
>WENV180307457
OBJQ01000237
[OBJQ] human gut metagenome; human gut
10800
10884
+
Tyr
GTA
[ENA]
¡û
>WENV180307725
OBJQ01001550
[OBJQ] human gut metagenome; human gut
11136
11053
-
Tyr
GTA
[ENA]
¡û
>WENV180446522
OBXC01000233
[OBXC] human gut metagenome; faeces
54064
54148
+
Tyr
GTA
[ENA]
¡û
>WENV180457719
OBXV01000022
[OBXV] human gut metagenome; faeces
84839
84756
-
Tyr
GTA
[ENA]
¡û
>WENV180458210
OBXV01003243
[OBXV] human gut metagenome; faeces
2926
3009
+
Tyr
GTA
[ENA]
¡û
>WENV180466333
OBYG01000439
[OBYG] human gut metagenome; faeces
38499
38582
+
Tyr
GTA
[ENA]
¡û
>WENV180482065
OBZG01000049
[OBZG] human gut metagenome; faeces
125650
125733
+
Tyr
GTA
[ENA]
¡û
>WENV180482231
OBZG01000185
[OBZG] human gut metagenome; faeces
328
411
+
Tyr
GTA
[ENA]
¡û
>WENV180534946
OCHM01148073
[OCHM] human gut metagenome; human gut
71
154
+
Tyr
GTA
[ENA]
¡û
>WENV180552739
OCJH01163590
[OCJH] human gut metagenome; human gut
214
129
-
Tyr
GTA
[ENA]
¡û
>WENV180909267
ODQJ01150916
[ODQJ] human metagenome; G_DNA_Stool
70
153
+
Tyr
GTA
[ENA]
¡û
>WENV181183666
OEJW01002170
[OEJW] human metagenome; G_DNA_Stool
141
58
-
Tyr
GTA
[ENA]
¡û
>WENV181337915
OFMF01000096
[OFMF] human gut metagenome; human gut
59008
58924
-
Tyr
GTA
[ENA]
¡û
>WENV181339168
OFMG01000124
[OFMG] human gut metagenome; human gut
89984
90067
+
Tyr
GTA
[ENA]
¡û
>WENV181342965
OFMJ01000194
[OFMJ] human gut metagenome; human gut
46898
46982
+
Tyr
GTA
[ENA]
¡û
>WENV181558053
OGIW01002175
[OGIW] metagenome; Human gut stool
2515
2432
-
Tyr
GTA
[ENA]
¡û
>WENV181588303
OGKH01009758
[OGKH] metagenome; Human gut stool
782
865
+
Tyr
GTA
[ENA]
¡û
>WENV181600034
OGLD01000022
[OGLD] metagenome; Human gut stool
68511
68594
+
Tyr
GTA
[ENA]
¡û
>WENV181733598
OGQE01005215
[OGQE] human gut metagenome; faeces
2451
2534
+
Tyr
GTA
[ENA]
¡û
>WENV181735832
OGQG01006512
[OGQG] human gut metagenome; faeces
161
78
-
Tyr
GTA
[ENA]
¡û
>WENV181782484
OGRK01021644
[OGRK] human gut metagenome; faeces
1311
1394
+
Tyr
GTA
[ENA]
¡û
>WENV181823756
OGUJ01006477
[OGUJ] metagenome; Human gut stool
1758
1675
-
Tyr
GTA
[ENA]
¡û
>WENV181831123
OGUO01039640
[OGUO] human gut metagenome; faeces
199
116
-
Tyr
GTA
[ENA]
¡û
>WENV181834322
OGUR01000069
[OGUR] metagenome; Human gut stool
160
77
-
Tyr
GTA
[ENA]
¡û
>WENV181879293
OGXF01000136
[OGXF] human gut metagenome; faeces
20223
20140
-
Tyr
GTA
[ENA]
¡û
>WENV181887474
OGXL01005670
[OGXL] human gut metagenome; faeces
3717
3800
+
Tyr
GTA
[ENA]
¡û
>WENV181975716
OHAC01024659
[OHAC] human gut metagenome; faeces
1261
1344
+
Tyr
GTA
[ENA]
¡û
>WENV182006493
OHBF01003421
[OHBF] human gut metagenome; feces
2914
2997
+
Tyr
GTA
[ENA]
¡û
>WENV182043526
OHDQ01000181
[OHDQ] human gut metagenome; feces
154
71
-
Tyr
GTA
[ENA]
¡û
>WENV182073115
OHFN01032851
[OHFN] human gut metagenome; feces
143
60
-
Tyr
GTA
[ENA]
¡û
>WENV182096482
OHHN01002586
[OHHN] human gut metagenome; feces
4029
4112
+
Tyr
GTA
[ENA]
¡û
>WENV182102411
OHHV01000053
[OHHV] human gut metagenome; feces
33681
33598
-
Tyr
GTA
[ENA]
¡û
>WENV182123855
OHJQ01000288
[OHJQ] human gut metagenome; feces
144
61
-
Tyr
GTA
[ENA]
¡û
>WENV182127700
OHJX01000054
[OHJX] human gut metagenome; feces
19449
19366
-
Tyr
GTA
[ENA]
¡û
>WENV182130713
OHKB01016530
[OHKB] human gut metagenome; feces
300
383
+
Tyr
GTA
[ENA]
¡û
>WENV182174869
OHNF01020085
[OHNF] human gut metagenome; feces
175
92
-
Tyr
GTA
[ENA]
¡û
>WENV182177907
OHNK01013806
[OHNK] human gut metagenome; feces
145
60
-
Tyr
GTA
[ENA]
¡û
>WENV182207671
OHPW01022286
[OHPW] human gut metagenome; feces
138
55
-
Tyr
GTA
[ENA]
¡û
>WENV182222975
OHQZ01000085
[OHQZ] human gut metagenome; feces
3304
3221
-
Tyr
GTA
[ENA]
¡û
>WENV182227344
OHRG01000262
[OHRG] human gut metagenome; feces
41736
41820
+
Tyr
GTA
[ENA]
¡û
>WENV182228541
OHRH01003626
[OHRH] human gut metagenome; feces
4629
4713
+
Tyr
GTA
[ENA]
¡û
>WENV182230607
OHRL01003140
[OHRL] human gut metagenome; feces
5795
5712
-
Tyr
GTA
[ENA]
¡û
>WENV182314422
OHYA01000795
[OHYA] human gut metagenome; feces
674
757
+
Tyr
GTA
[ENA]
¡û
>WENV182505927
OIUZ01000144
[OIUZ] human gut metagenome; human gut
73
157
+
Tyr
GTA
[ENA]
¡û
>WENV182512809
OIWL01024156
[OIWL] human gut metagenome; faeces
1245
1328
+
Tyr
GTA
[ENA]
¡û
>WENV182622145
OJKJ01008045
[OJKJ] metagenome; faeces
600
683
+
Tyr
GTA
[ENA]
¡û
>WENV182715936
OJPI01043335
[OJPI] human gut metagenome; stool sample
142
59
-
Tyr
GTA
[ENA]
¡û
>WENV182889255
OKSF01000028
[OKSF] human gut metagenome; faeces
73238
73154
-
Tyr
GTA
[ENA]
¡û
>WENV182907561
OKTF01000100
[OKTF] human gut metagenome; feces
67769
67853
+
Tyr
GTA
[ENA]
¡û
>WENV182909363
OKTH01011153
[OKTH] human gut metagenome; feces
1073
1156
+
Tyr
GTA
[ENA]
¡û
>WENV182917389
OKTU01009381
[OKTU] human gut metagenome; feces
175
92
-
Tyr
GTA
[ENA]
¡û
>WENV183100695
OLNG01000243
[OLNG] human gut metagenome; faeces
53078
52994
-
Tyr
GTA
[ENA]
¡û
>WENV183101372
OLNH01000064
[OLNH] human gut metagenome; faeces
3476
3393
-
Tyr
GTA
[ENA]
¡û
>WENV183102702
OLNI01002300
[OLNI] human gut metagenome; faeces
2615
2532
-
Tyr
GTA
[ENA]
¡û
>WENV183118590
OLNT01000001
[OLNT] human gut metagenome; faeces
276902
276817
-
Tyr
GTA
[ENA]
¡û
>WENV183123172
OLNW01000334
[OLNW] human gut metagenome; faeces
24009
23925
-
Tyr
GTA
[ENA]
¡û
>WENV183134494
OLOD01000458
[OLOD] human gut metagenome; faeces
177
94
-
Tyr
GTA
[ENA]
¡û
>WENV183147213
OLON01000014
[OLON] human gut metagenome; faeces
35258
35343
+
Tyr
GTA
[ENA]
¡û
>WENV183148424
OLOO01000002
[OLOO] human gut metagenome; faeces
323329
323244
-
Tyr
GTA
[ENA]
¡û
>WENV183167649
OLOZ01000500
[OLOZ] human gut metagenome; faeces
173
90
-
Tyr
GTA
[ENA]
¡û
>WENV183225960
OLQO01000374
[OLQO] human gut metagenome; faeces
35257
35342
+
Tyr
GTA
[ENA]
¡û
>WENV183241548
OLRB01000125
[OLRB] human gut metagenome; faeces
29369
29285
-
Tyr
GTA
[ENA]
¡û
>WENV183256736
OLRL01000213
[OLRL] human gut metagenome; faeces
141
58
-
Tyr
GTA
[ENA]
¡û
>WENV183260150
OLRP01000021
[OLRP] human gut metagenome; faeces
89199
89114
-
Tyr
GTA
[ENA]
¡û
>WENV183264045
OLRR01004362
[OLRR] human gut metagenome; faeces
5159
5074
-
Tyr
GTA
[ENA]
¡û
>WENV183290254
OLSH01000060
[OLSH] human gut metagenome; faeces
89343
89426
+
Tyr
GTA
[ENA]
¡û
>WENV183291019
OLSI01000082
[OLSI] human gut metagenome; faeces
69253
69336
+
Tyr
GTA
[ENA]
¡û
>WENV183300533
OLSO01000693
[OLSO] human gut metagenome; faeces
175
92
-
Tyr
GTA
[ENA]
¡û
>WENV183316762
OLVT01000326
[OLVT] human gut metagenome; faeces
161
78
-
Tyr
GTA
[ENA]
¡û
>WENV183595424
OODC01021410
[OODC] human gut metagenome; human gut
175
92
-
Tyr
GTA
[ENA]
¡û
>WENV183611564
OODT01000527
[OODT] human gut metagenome; human gut
35196
35281
+
Tyr
GTA
[ENA]
¡û
>WENV183765195
PPYE01332863
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
165
82
-
Tyr
GTA
[ENA]
¡û
>WENV183791884
PPYF01441325
[PPYF] human gut metagenome; stool from patient with Crohn's disease
786
703
-
Tyr
GTA
[ENA]
¡û
>W09113631
ABYU02000010
Bacillota
Blautia hansenii DSM 20583 [ABYU]
55003
55088
+
Tyr
GTA
[ENA]
¡û
>W09113656
ABYU02000021
Bacillota
Blautia hansenii DSM 20583 [ABYU]
48046
47963
-
Tyr
GTA
[ENA]
¡û
>C181064408
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
19744
19827
+
Tyr
GTA
-
¡û
>C181064471
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
553326
553242
-
Tyr
GTA
-
¡û
>C181191260
CP030280
Bacillota
Blautia argi KCTC 15426 [CP030280]
2802603
2802687
+
Tyr
GTA
-
¡û
>C181191287
CP030280
Bacillota
Blautia argi KCTC 15426 [CP030280]
31861
31780
-
Tyr
GTA
-
¡û
>W1910237447
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
289762
289678
-
Tyr
GTA
[ENA]
¡û
>W1910237458
FPLC01000011
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
1195581
1195498
-
Tyr
GTA
[ENA]
¡û
>W1911742818
QVHE01000029
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
29159
29243
+
Tyr
GTA
[ENA]
¡û
>W1911742851
QVHF01000019
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
52700
52617
-
Tyr
GTA
[ENA]
¡û
>W1911742858
QVHF01000029
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
29165
29249
+
Tyr
GTA
[ENA]
¡û
>W1810862815
QTUU01000001
Bacillota
Firmicutes bacterium AM10-47 [QTUU]
456304
456219
-
Tyr
GTA
[ENA]
¡û
>W1810883165
QULP01000008
Bacillota
Firmicutes bacterium OM04-13BH [QULP]
168
251
+
Tyr
GTA
[ENA]
¡û
>W1810906778
QVGF01000012
Bacillota
Lachnospiraceae bacterium AM25-22 [QVGF]
29536
29620
+
Tyr
GTA
[ENA]
¡û
>W1810906783
QVGF01000018
Bacillota
Lachnospiraceae bacterium AM25-22 [QVGF]
171
254
+
Tyr
GTA
[ENA]
¡û
>W1810906919
QVGI01000009
Bacillota
Lachnospiraceae bacterium AM25-11LB [QVGI]
132369
132453
+
Tyr
GTA
[ENA]
¡û
>W2010253980
CABJAN020000012
Bacillota
Firmicutes bacterium [CABJAN]
34575
34492
-
Tyr
GTA
[ENA]
¡û
>W2010254004
CABJAN020000029
Bacillota
Firmicutes bacterium [CABJAN]
35845
35762
-
Tyr
GTA
[ENA]
¡û
>W2010278977
CABMFJ010000008
Bacillota
Firmicutes bacterium [CABMFJ]
168
251
+
Tyr
GTA
[ENA]
¡û
>W2010386656
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
289762
289678
-
Tyr
GTA
[ENA]
¡û
>W2010386667
FPLC01000011
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
1195581
1195498
-
Tyr
GTA
[ENA]
¡û
>W2010485666
JAAITA010000003
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
43732
43649
-
Tyr
GTA
[ENA]
¡û
>W2010485675
JAAITA010000009
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
341
422
+
Tyr
GTA
[ENA]
¡û
>W2010576888
JAAWUJ010000006
Bacillota
Blautia producta MSK.4.17 [JAAWUJ]
109842
109759
-
Tyr
GTA
[ENA]
¡û
>W2010576918
JAAWUJ010000037
Bacillota
Blautia producta MSK.4.17 [JAAWUJ]
329
412
+
Tyr
GTA
[ENA]
¡û
>W2010576946
JAAWUK010000006
Bacillota
Blautia producta MSK.4.13 [JAAWUK]
110031
109948
-
Tyr
GTA
[ENA]
¡û
>W2010576980
JAAWUK010000039
Bacillota
Blautia producta MSK.4.13 [JAAWUK]
329
412
+
Tyr
GTA
[ENA]
¡û
>W2010577064
JAAWUM010000006
Bacillota
Blautia producta MSK.4.14 [JAAWUM]
109842
109759
-
Tyr
GTA
[ENA]
¡û
>W2010577094
JAAWUM010000037
Bacillota
Blautia producta MSK.4.14 [JAAWUM]
329
412
+
Tyr
GTA
[ENA]
¡û
>W2011307490
QVHE01000029
Bacillota
Lachnospiraceae bacterium AM25-40 [QVHE]
29159
29243
+
Tyr
GTA
[ENA]
¡û
>W2011307523
QVHF01000019
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
52700
52617
-
Tyr
GTA
[ENA]
¡û
>W2011307530
QVHF01000029
Bacillota
Lachnospiraceae bacterium AM25-39 [QVHF]
29165
29249
+
Tyr
GTA
[ENA]
¡û
>W2110075522
CACRSY010000005
Bacillota
Blautia hansenii [CACRSY]
144835
144752
-
Tyr
GTA
[ENA]
¡û
>W2110075552
CACRSY010000009
Bacillota
Blautia hansenii [CACRSY]
133525
133609
+
Tyr
GTA
[ENA]
¡û
>W2110248569
JACRTP010000001
Bacillota
Blautia stercoris 3_YM_SP_D4_24.mj [JACRTP]
556455
556540
+
Tyr
GTA
[ENA]
¡û
>W2110248611
JACRTP010000007
Bacillota
Blautia stercoris 3_YM_SP_D4_24.mj [JACRTP]
120369
120286
-
Tyr
GTA
[ENA]
¡û
>C201308485
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
20435
20518
+
Tyr
GTA
-
¡û
>C201308548
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
554017
553933
-
Tyr
GTA
-
¡û
>W2110720888
JAJBOG010000003
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
201878
201961
+
Tyr
GTA
[ENA]
¡û
>W2110720906
JAJBOG010000008
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
341
422
+
Tyr
GTA
[ENA]
¡û
>C211423234
LR994468
Bacillota
Blautia argi [LR994468]
20412
20493
+
Tyr
GTA
-
¡û
>C211423283
LR994468
Bacillota
Blautia argi [LR994468]
554911
554827
-
Tyr
GTA
-
¡û
>C231449360
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
19744
19827
+
Tyr
GTA
-
¡û
>C231449423
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
553327
553243
-
Tyr
GTA
-
¡û
>W11105883
ACTV01000017
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
135530
135615
+
Tyr
GTA
[ENA]
¡û
>W11105904
ACTV01000025
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
63819
63736
-
Tyr
GTA
[ENA]
¡û
>W1511578897
LARB01000251
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
868
785
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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